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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 08, 2021 |
| Title |
Nr14_ID_006030_FinO_OD_05_2xpur |
| Sample type |
SRA |
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| Source name |
FinO_OD_05_2xpur
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| Organism |
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Characteristics |
growth: OD0.5
genotype: FinO::3xFLAG
ip antibody: anti-FLAG
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| Treatment protocol |
lysis by beads, FLAG-CoIP
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| Growth protocol |
LB media, 37 °C, indicated OD
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| Extracted molecule |
total RNA |
| Extraction protocol |
PCI extraction, DNase I treatment
NEBNext® Small RNA Library Prep (Illumina)
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| Library strategy |
RIP-Seq |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
READemption 0.4.3, align, coverage (as previoulsy described Smirnov et al. 2016)
Genome_build: NC_016810.1,NC_017720.1,NC_017718.1,NC_017719.1
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| Submission date |
Feb 03, 2021 |
| Last update date |
Apr 08, 2021 |
| Contact name |
Jörg Vogel |
| E-mail(s) |
[email protected]
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| Organization name |
Würzburg University
|
| Department |
Institute for Molecular Infection Biology
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| Lab |
Jörg Vogel lab
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| Street address |
Josef-Schneider-Straße 2
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| City |
Würzburg |
| ZIP/Postal code |
97080 |
| Country |
Germany |
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| Platform ID |
GPL20056 |
| Series (1) |
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| Relations |
| BioSample |
SAMN17771843 |
| SRA |
SRX10015141 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM5061915_Nr14_ID_006030_FinO_OD_05_2xpur_forward.wig.gz |
3.0 Mb |
(ftp)(http) |
WIG |
| GSM5061915_Nr14_ID_006030_FinO_OD_05_2xpur_reverse.wig.gz |
3.1 Mb |
(ftp)(http) |
WIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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