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Sample GSM51670 Query DataSets for GSM51670
Status Public on May 20, 2005
Title Mouse synovial fibroblast vehicle
Sample type RNA
 
Source name DBA/1J_synovial fibroblast
Organism Mus musculus
Extracted molecule total RNA
 
Description Synovial fibroblasts were extracted from knee joints of naïve mice(DBA/1J, male 8-12 week old), and passaged 3-4 times. Cells were plated at a concentration of 1 X 106 cells/dish in 60 mm dish in 5 ml of RPMI1640 medium with 1% heat-inactivated FCS at 37°C, 5% CO2. Cells were treated vehicle or stimulated by IL-1beta. In IL-1beta(5ng/ml) stimulated groups, indomethacin (1 μM) and iloprost (1μM) were further added either alone or in combination. After 6 hour stimulation as described above, cells were isolated and frozen by liquid nitrogen, and stored at –80°C before use. Total RNA was extracted by RNAeasy Mini Kit. The RNA sample was labeled for hybridization onto the genechip array according to the standard affymetrix protcols.
Keywords = arthritis prostacyclin
 
Submission date May 18, 2005
Last update date Sep 08, 2006
Contact name tetsuya honda
E-mail(s) [email protected]
Phone 075-753-4395
Organization name kyoto university
Street address
City kyoto
ZIP/Postal code 606-8501
Country Japan
 
Platform ID GPL339
Series (1)
GSE2676 Synovial fibroblast activated by IL-1beta; effect of prostacyclin signaling

Data table header descriptions
ID_REF
VALUE GeneChip Operating Software(GCOS)
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significant level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 73.7 P 0.000127
AFFX-BioB-M_at 114.4 P 0.000052
AFFX-BioB-3_at 71.3 P 0.000044
AFFX-BioC-5_at 250.2 P 0.000044
AFFX-BioC-3_at 317.3 P 0.000044
AFFX-BioDn-5_at 652.6 P 0.000044
AFFX-BioDn-3_at 1131.1 P 0.000044
AFFX-CreX-5_at 2550.6 P 0.000052
AFFX-CreX-3_at 3608 P 0.000044
AFFX-DapX-5_at 109.3 P 0.00007
AFFX-DapX-M_at 197 P 0.000446
AFFX-DapX-3_at 184 P 0.000044
AFFX-LysX-5_at 16.4 P 0.000446
AFFX-LysX-M_at 18.4 P 0.021893
AFFX-LysX-3_at 33.3 P 0.000225
AFFX-PheX-5_at 18.9 P 0.00011
AFFX-PheX-M_at 27.7 P 0.000195
AFFX-PheX-3_at 17.2 P 0.000509
AFFX-ThrX-5_at 37.1 P 0.000258
AFFX-ThrX-M_at 43.6 P 0.00006

Total number of rows: 22690

Table truncated, full table size 605 Kbytes.




Supplementary data files not provided

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