NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM517083 Query DataSets for GSM517083
Status Public on Oct 28, 2010
Title VND6_12h_rep2
Sample type RNA
 
Source name VND6 culture cell, 12h
Organism Arabidopsis thaliana
Characteristics cultured cell type: VND6 culture cell
time point: 12h
Treatment protocol cultured cells were treated with 2 μM estrogen for 0h and 12h
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with TRIzol (Invitrogen) and purified with Rneasy Micro Kit (QIAGEN)
Label biotin
Label protocol Biotinylated cRNA was prepared from total RNA with GeneChip One-Cycle Target Labeling and Control Reagents (Arab-0018 to Arab-0054) or GeneChip 3' IVT Expression Kit (Arab-113-2 to Arab-124) (Affymetrix).
 
Hybridization protocol Hybridization, washing, staining procedures were conducted with Fluidics Station 450 as described in the GeneChip Expression Analysis Technical Manual (Affymetrix).
Scan protocol Scanning procedure was conducted with GeneChip Scanner 3000 7G as described in the GeneChip Expression Analysis Technical Manual (Affymetrix).
Description Estrogen-inducible VND6 transformed cells with 12h estrogen treatment
Data processing GCOS, ExpressionStat 5.0
 
Submission date Mar 02, 2010
Last update date Aug 15, 2018
Contact name Kyoko Ohashi-Ito
E-mail(s) [email protected]
Phone +81-3-5841-4463
Organization name the university of tokyo
Department biological sciences
Street address 7-3-1 hongo bunkyo-ku
City tokyo
ZIP/Postal code 113-0033
Country Japan
 
Platform ID GPL198
Series (1)
GSE20586 Expression data from Arabidopsis suspension cells overexpressing VND6 and SND1
Relations
Reanalyzed by GSE118579

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 311.666 P 0.000126798
AFFX-BioB-M_at 353.523 P 5.16732e-05
AFFX-BioB-3_at 254.952 P 5.16732e-05
AFFX-BioC-5_at 939.232 P 4.42873e-05
AFFX-BioC-3_at 679.273 P 0.000126798
AFFX-BioDn-5_at 2214.72 P 4.42873e-05
AFFX-BioDn-3_at 3420.62 P 4.42873e-05
AFFX-CreX-5_at 11471.6 P 4.42873e-05
AFFX-CreX-3_at 14003.8 P 4.42873e-05
AFFX-DapX-5_at 11.4653 A 0.354453
AFFX-DapX-M_at 3.95654 A 0.749204
AFFX-DapX-3_at 2.0495 A 0.953518
AFFX-LysX-5_at 4.58229 A 0.544587
AFFX-LysX-M_at 1.72892 A 0.969024
AFFX-LysX-3_at 22.5536 A 0.470241
AFFX-PheX-5_at 1.30872 A 0.996405
AFFX-PheX-M_at 1.50324 A 0.921998
AFFX-PheX-3_at 15.2243 A 0.41138
AFFX-ThrX-5_at 2.77037 A 0.631562
AFFX-ThrX-M_at 5.9501 A 0.617401

Total number of rows: 22810

Table truncated, full table size 679 Kbytes.




Supplementary file Size Download File type/resource
GSM517083.CEL.gz 2.1 Mb (ftp)(http) CEL
GSM517083.CHP.gz 123.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap