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Sample GSM517089 Query DataSets for GSM517089
Status Public on Oct 28, 2010
Title SND1_12h_rep2
Sample type RNA
 
Source name SND1 culture cell, 12h
Organism Arabidopsis thaliana
Characteristics cultured cell type: SND1 culture cell
time point: 12h
Treatment protocol cultured cells were treated with 2 μM estrogen for 0h and 12h
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with TRIzol (Invitrogen) and purified with Rneasy Micro Kit (QIAGEN)
Label biotin
Label protocol Biotinylated cRNA was prepared from total RNA with GeneChip One-Cycle Target Labeling and Control Reagents (Arab-0018 to Arab-0054) or GeneChip 3' IVT Expression Kit (Arab-113-2 to Arab-124) (Affymetrix).
 
Hybridization protocol Hybridization, washing, staining procedures were conducted with Fluidics Station 450 as described in the GeneChip Expression Analysis Technical Manual (Affymetrix).
Scan protocol Scanning procedure was conducted with GeneChip Scanner 3000 7G as described in the GeneChip Expression Analysis Technical Manual (Affymetrix).
Description Estrogen-inducible SND1 transformed cells with 12h estrogen treatment
Data processing GCOS, ExpressionStat 5.0
 
Submission date Mar 02, 2010
Last update date Aug 15, 2018
Contact name Kyoko Ohashi-Ito
E-mail(s) [email protected]
Phone +81-3-5841-4463
Organization name the university of tokyo
Department biological sciences
Street address 7-3-1 hongo bunkyo-ku
City tokyo
ZIP/Postal code 113-0033
Country Japan
 
Platform ID GPL198
Series (1)
GSE20586 Expression data from Arabidopsis suspension cells overexpressing VND6 and SND1
Relations
Reanalyzed by GSE118579

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 234.291 P 0.00010954
AFFX-BioB-M_at 314.644 P 4.42873e-05
AFFX-BioB-3_at 273.558 P 9.4506e-05
AFFX-BioC-5_at 832.085 P 4.42873e-05
AFFX-BioC-3_at 728.649 P 0.00010954
AFFX-BioDn-5_at 1986.28 P 4.42873e-05
AFFX-BioDn-3_at 3343.23 P 4.42873e-05
AFFX-CreX-5_at 10605 P 4.42873e-05
AFFX-CreX-3_at 14577.5 P 4.42873e-05
AFFX-DapX-5_at 6.5531 A 0.544587
AFFX-DapX-M_at 3.36094 A 0.824672
AFFX-DapX-3_at 3.52002 A 0.824672
AFFX-LysX-5_at 8.23444 A 0.699409
AFFX-LysX-M_at 1.93808 A 0.971543
AFFX-LysX-3_at 18.3751 A 0.195266
AFFX-PheX-5_at 21.252 A 0.544587
AFFX-PheX-M_at 3.21215 A 0.953518
AFFX-PheX-3_at 14.0074 A 0.672921
AFFX-ThrX-5_at 3.52513 A 0.749204
AFFX-ThrX-M_at 3.96803 A 0.672921

Total number of rows: 22810

Table truncated, full table size 680 Kbytes.




Supplementary file Size Download File type/resource
GSM517089.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM517089.CHP.gz 122.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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