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Sample GSM51906

Query DataSets for GSM51906

Status

Public on Jul 19, 2005

Title

1284_RNT1_2

Sample type

RNA

Source name

Rnt1 knockout BMA64

Organism

Saccharomyces cerevisiae

Extracted molecule

total RNA

Description

Strain background is BMA64 with RNT1 gene deleted with the TRP marker Media is SD -Trp (synthetic dextrose minimal media missing tryptophan) Cells were grown until midlog and harvested at OD600=0.4; MAS5 (Statistical Algorithm) Scaling:All Probe Sets Target Signal 500;Normalization:All Probe Sets; Alpha1=0.04; Alpha2=0.06; Tau=0.015

Submission date

May 19, 2005

Last update date

May 29, 2005

Contact name

Guillaume Francois Chanfreau

E-mail(s)

[email protected]

Phone

1-310-825-4399

Organization name

UCLA

Department

Chemistry and Biochemistry

Street address

607 Charles E. Young Drive East

City

Los Angeles

State/province

ZIP/Postal code

90095-1569

Country

USA

Platform ID

GPL90

Series (1)

GSE2683

Rnt1 KO Sc and Wild-type BMA64 Sc

Data table header descriptions
ID_REF
VALUE	MAS5 SA Signal
ABS_CALL	MAS5 SA Detection
DETECTION P-VALUE	MAS5 SA Detection P-value

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MurIL2_at	6.7	A	0.995002
AFFX-MurIL10_at	10.9	A	0.712257
AFFX-MurIL4_at	5.3	A	0.941556
AFFX-MurFAS_at	4.6	A	0.976071
AFFX-BioB-5_at	256.5	P	0.001102
AFFX-BioB-M_at	380.3	P	0.000127
AFFX-BioB-3_at	308.4	P	0.00034
AFFX-BioC-5_at	558.4	P	0.00007
AFFX-BioC-3_at	595.6	P	0.000044
AFFX-BioDn-5_at	636.5	P	0.000044
AFFX-BioDn-3_at	5288.5	P	0.000044
AFFX-CreX-5_at	6549.7	P	0.000044
AFFX-CreX-3_at	11136.8	P	0.000044
AFFX-BioB-5_st	5	A	0.860559
AFFX-BioB-M_st	4.5	A	0.86866
AFFX-BioB-3_st	5.6	A	0.843268
AFFX-BioC-5_st	4.7	A	0.953661
AFFX-BioC-3_st	24.1	A	0.737173
AFFX-BioDn-5_st	65.2	A	0.340661
AFFX-BioDn-3_st	69.2	P	0.036569

Total number of rows: 9335

Table truncated, full table size 227 Kbytes.

Supplementary data files not provided