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Sample GSM519096 Query DataSets for GSM519096
Status Public on May 01, 2010
Title PAH-9-PAEC
Sample type genomic
 
Source name pulmonary artery epithelial cells cultured from subject PAH-9
Organism Homo sapiens
Characteristics disease status: Pulmonary Arterial Hypertension
cell type: pulmonary artery epithelial cells
Growth protocol as reported in Xu, W., Koeck, T., Lara, A. R., Neumann, D., DiFilippo, F. P., Koo, M., Janocha, A. J., Masri, F. A., Arroliga, A. C., Jennings, C. et al. (2007) Proc. Natl. Acad. Sci. U. S. A 104, 1342-1347.
Extracted molecule genomic DNA
Extraction protocol Qiagen DNA mini
Label Biotin
Label protocol standard Affymetrix
 
Hybridization protocol standard Affymetrix
Scan protocol standard Affymetrix
Description PAH-9-PAEC-6p0
Data processing Genotype calls were made using the BRLMM (GPL3718, GPL3720) and Birdseed v2(GPL6801) algorithms as implemented in Affymetrix power tools.
Locus-specific copy number estimates were generated in Partek Genomics Suite using default parameters and 270 hapmap samples as diploid controls.
 
Submission date Mar 08, 2010
Last update date Mar 09, 2010
Contact name Christopher D Coldren
E-mail(s) [email protected]
Phone 303 724 6056
Organization name University of Colorado School of Medicine
Department Medicine
Lab Pulmonary Sciences and Critical Care Medicine
Street address 12700 East 17th Place
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platform ID GPL6801
Series (1)
GSE20206 Acquired chromosome abnormalities in the lungs of patients with Pulmonary Arterial Hypertension

Data table header descriptions
ID_REF
VALUE Copy number estimates (Partek Genomics Suite)
CALL

Data table
ID_REF VALUE CALL
AFFX-SNP_10000979 2.998 AB
AFFX-SNP_10009702 2.28056 NC
AFFX-SNP_10015773 3.34428 AA
AFFX-SNP_10021569 4.26138 AB
AFFX-SNP_10026879 1.45976 BB
AFFX-SNP_10029725 3.28304 AA
AFFX-SNP_10034687 3.09897 BB
AFFX-SNP_10036267 2.37078 AB
AFFX-SNP_10037362 1.41895 BB
AFFX-SNP_10037636 2.10984 BB
AFFX-SNP_10039349 2.02098 AB
AFFX-SNP_10039442 2.13917 AA
AFFX-SNP_10039933 1.56305 BB
AFFX-SNP_10046830 3.0186 BB
AFFX-SNP_10047363 2.67588 AB
AFFX-SNP_10047841 1.6266 AA
AFFX-SNP_10049334 1.8922 AA
AFFX-SNP_10052664 1.86674 AB
AFFX-SNP_10057887 2.46019 AB
AFFX-SNP_10064911 2.24332 AB

Total number of rows: 1855448

Table truncated, full table size 41845 Kbytes.




Supplementary file Size Download File type/resource
GSM519096.cel.gz 24.7 Mb (ftp)(http) CEL
GSM519096.chp.gz 12.9 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
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