NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM519098 Query DataSets for GSM519098
Status Public on May 01, 2010
Title CF-2-PAEC
Sample type genomic
 
Source name pulmonary artery epithelial cells cultured from subject CF-2
Organism Homo sapiens
Characteristics disease status: Cystic Fibrosis
cell type: pulmonary artery epithelial cells
Growth protocol as reported in Xu, W., Koeck, T., Lara, A. R., Neumann, D., DiFilippo, F. P., Koo, M., Janocha, A. J., Masri, F. A., Arroliga, A. C., Jennings, C. et al. (2007) Proc. Natl. Acad. Sci. U. S. A 104, 1342-1347.
Extracted molecule genomic DNA
Extraction protocol Qiagen DNA mini
Label Biotin
Label protocol standard Affymetrix
 
Hybridization protocol standard Affymetrix
Scan protocol standard Affymetrix
Description CF-2-PAEC-6p0
Data processing Genotype calls were made using the BRLMM (GPL3718, GPL3720) and Birdseed v2(GPL6801) algorithms as implemented in Affymetrix power tools.
Locus-specific copy number estimates were generated in Partek Genomics Suite using default parameters and 270 hapmap samples as diploid controls.
 
Submission date Mar 08, 2010
Last update date Mar 09, 2010
Contact name Christopher D Coldren
E-mail(s) [email protected]
Phone 303 724 6056
Organization name University of Colorado School of Medicine
Department Medicine
Lab Pulmonary Sciences and Critical Care Medicine
Street address 12700 East 17th Place
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platform ID GPL6801
Series (1)
GSE20206 Acquired chromosome abnormalities in the lungs of patients with Pulmonary Arterial Hypertension

Data table header descriptions
ID_REF
VALUE Copy number estimates (Partek Genomics Suite)
CALL

Data table
ID_REF VALUE CALL
AFFX-SNP_10000979 2.54799 BB
AFFX-SNP_10009702 1.74208 AB
AFFX-SNP_10015773 3.00703 NC
AFFX-SNP_10021569 4.89113 AB
AFFX-SNP_10026879 1.5325 BB
AFFX-SNP_10029725 2.20313 BB
AFFX-SNP_10034687 2.12848 AB
AFFX-SNP_10036267 2.31187 BB
AFFX-SNP_10037362 1.9948 AB
AFFX-SNP_10037636 2.09064 BB
AFFX-SNP_10039349 2.06193 BB
AFFX-SNP_10039442 1.42999 AA
AFFX-SNP_10039933 1.76128 BB
AFFX-SNP_10046830 2.58399 BB
AFFX-SNP_10047363 2.45298 BB
AFFX-SNP_10047841 1.90916 AB
AFFX-SNP_10049334 2.03751 AA
AFFX-SNP_10052664 2.35204 AB
AFFX-SNP_10057887 1.81555 AB
AFFX-SNP_10064911 3.08885 AB

Total number of rows: 1855448

Table truncated, full table size 41815 Kbytes.




Supplementary file Size Download File type/resource
GSM519098.cel.gz 26.0 Mb (ftp)(http) CEL
GSM519098.chp.gz 13.0 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap