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Sample GSM519102 Query DataSets for GSM519102
Status Public on May 01, 2010
Title COPD-2-PAEC
Sample type genomic
 
Source name pulmonary artery epithelial cells cultured from subject COPD-2
Organism Homo sapiens
Characteristics disease status: Chronic Obstructive Pulmonary Disease
cell type: pulmonary artery epithelial cells
Growth protocol as reported in Xu, W., Koeck, T., Lara, A. R., Neumann, D., DiFilippo, F. P., Koo, M., Janocha, A. J., Masri, F. A., Arroliga, A. C., Jennings, C. et al. (2007) Proc. Natl. Acad. Sci. U. S. A 104, 1342-1347.
Extracted molecule genomic DNA
Extraction protocol Qiagen DNA mini
Label Biotin
Label protocol standard Affymetrix
 
Hybridization protocol standard Affymetrix
Scan protocol standard Affymetrix
Description COPD-2-PAEC-6p0
Data processing Genotype calls were made using the BRLMM (GPL3718, GPL3720) and Birdseed v2(GPL6801) algorithms as implemented in Affymetrix power tools.
Locus-specific copy number estimates were generated in Partek Genomics Suite using default parameters and 270 hapmap samples as diploid controls.
 
Submission date Mar 08, 2010
Last update date Mar 09, 2010
Contact name Christopher D Coldren
E-mail(s) [email protected]
Phone 303 724 6056
Organization name University of Colorado School of Medicine
Department Medicine
Lab Pulmonary Sciences and Critical Care Medicine
Street address 12700 East 17th Place
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platform ID GPL6801
Series (1)
GSE20206 Acquired chromosome abnormalities in the lungs of patients with Pulmonary Arterial Hypertension

Data table header descriptions
ID_REF
VALUE Copy number estimates (Partek Genomics Suite)
CALL

Data table
ID_REF VALUE CALL
AFFX-SNP_10000979 2.10915 BB
AFFX-SNP_10009702 2.13819 AB
AFFX-SNP_10015773 2.20677 BB
AFFX-SNP_10021569 4.96365 AA
AFFX-SNP_10026879 1.39753 BB
AFFX-SNP_10029725 2.72649 BB
AFFX-SNP_10034687 2.23952 BB
AFFX-SNP_10036267 2.54797 BB
AFFX-SNP_10037362 1.27671 BB
AFFX-SNP_10037636 1.5711 AB
AFFX-SNP_10039349 2.11232 AB
AFFX-SNP_10039442 1.75842 AA
AFFX-SNP_10039933 1.48845 BB
AFFX-SNP_10046830 2.40927 BB
AFFX-SNP_10047363 2.58895 AB
AFFX-SNP_10047841 1.71982 AA
AFFX-SNP_10049334 1.32486 AB
AFFX-SNP_10052664 2.49417 BB
AFFX-SNP_10057887 1.72848 AB
AFFX-SNP_10064911 2.86892 AB

Total number of rows: 1855448

Table truncated, full table size 41809 Kbytes.




Supplementary file Size Download File type/resource
GSM519102.cel.gz 25.6 Mb (ftp)(http) CEL
GSM519102.chp.gz 12.9 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
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