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Sample GSM522419 Query DataSets for GSM522419
Status Public on Oct 18, 2010
Title eto1-4 + 7303_3-day-old_rep2
Sample type RNA
 
Source name eto1-4 + 7303_3-day-old_rep2
Organism Arabidopsis thaliana
Characteristics ecotype: Col-0
genome/variation: ethylene mutant (eto1-4)
developmental stage: 3-day-old
tissue: whole seedling
growth condition: dark
Growth protocol Seedling were growth on 0.5x MS medium contain 10 μM compound 7303
Extracted molecule total RNA
Extraction protocol Pine Tree method, for preparation of total RNA from etiolated seedlingss
Plant Molecular Biology Reporter (1993) 11: 113-116
Label biotin
Label protocol Standard Affymetrix GeneChip labeling protocol
 
Hybridization protocol Standard Affymetrix GeneChip hybridization protocol
Scan protocol Standard Affymetrix GeneChip scanning protocol
Description N/A
Data processing MAS5.0 using default settings
 
Submission date Mar 16, 2010
Last update date Aug 15, 2018
Contact name Kevin Long-Chi WANG
E-mail(s) [email protected]
Phone +886227871181
Fax +886227827954
Organization name Academia Sinica
Department Institute of Plant and Microbial Biology
Street address 128 Section 2, Academia Road
City Taipei
ZIP/Postal code 11529
Country Taiwan
 
Platform ID GPL198
Series (1)
GSE20897 Effect of hit compounds on ethylene mutant eto1-4
Relations
Reanalyzed by GSE118579

Data table header descriptions
ID_REF
VALUE MAS5 calculated signal intensity
ABS_CALL Absence call
DETECTION P-VALUE Detection P-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 190.017 P 0.000146581
AFFX-BioB-M_at 285.551 P 5.16732e-05
AFFX-BioB-3_at 207.792 P 7.00668e-05
AFFX-BioC-5_at 647.686 P 5.16732e-05
AFFX-BioC-3_at 629.401 P 4.42873e-05
AFFX-BioDn-5_at 1828.11 P 4.42873e-05
AFFX-BioDn-3_at 2467.3 P 4.42873e-05
AFFX-CreX-5_at 8451.5 P 4.42873e-05
AFFX-CreX-3_at 10280.3 P 4.42873e-05
AFFX-DapX-5_at 50.1734 P 0.000509415
AFFX-DapX-M_at 212.092 P 0.000445901
AFFX-DapX-3_at 426.91 P 6.02111e-05
AFFX-LysX-5_at 28.2994 P 0.0125468
AFFX-LysX-M_at 44.0116 A 0.116113
AFFX-LysX-3_at 114.668 P 6.02111e-05
AFFX-PheX-5_at 32.9243 P 0.0125468
AFFX-PheX-M_at 33.1826 A 0.0894781
AFFX-PheX-3_at 83.9593 P 0.000753643
AFFX-ThrX-5_at 13.5428 A 0.165861
AFFX-ThrX-M_at 40.2281 P 0.000581214

Total number of rows: 22810

Table truncated, full table size 684 Kbytes.




Supplementary file Size Download File type/resource
GSM522419.CEL.gz 2.3 Mb (ftp)(http) CEL
GSM522419.CHP.gz 121.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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