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GEO accession:
Sample GSM525333
Query DataSets for GSM525333
Status
Public on Oct 01, 2010
Title
CLL cells PB patient #20
Sample type
RNA
Source name
PB derived CLL cells
Organism
Homo sapiens
Characteristics
cell type: CLL
origin: Peripheral blood
patient: patient #20
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted using Qiagen RNA extraction kit
Label
biotin
Label protocol
Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
Hybridization protocol
Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16 hours.
Scan protocol
Affymetrix GeneChip scanner
Description
primary CLL cells
Data processing
Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation
Submission date
Mar 23, 2010
Last update date
Nov 14, 2018
Contact name
Adrian Wiestner
E-mail(s)
[email protected]
Phone
301-594-6855
Organization name
NHLBI/NIH
Department
Hematology Branch
Street address
10 Center Dr
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL570
Series (1)
GSE21029
The lymph node microenvironment promotes B-cell receptor signaling, NF-κB activation, and tumor proliferation in chronic lymphocytic leukemia (CLL)
Relations
Reanalyzed by
GSE122511
Data table header descriptions
ID_REF
VALUE
S10 transformed data.
Data table
ID_REF
VALUE
1007_s_at
1.53460677
1053_at
1.2469085
117_at
0.82258483
121_at
1.36149125
1255_g_at
0.20047137
1294_at
1.69150486
1316_at
0.9853233
1320_at
0.50183557
1405_i_at
0.66892314
1431_at
0.78897256
1438_at
0.29521468
1487_at
1.2195318
1494_f_at
0.83617527
1552256_a_at
0.55841659
1552257_a_at
1.20411816
1552258_at
0.73359418
1552261_at
0.62719876
1552263_at
1.44984396
1552264_a_at
1.53056934
1552266_at
0.5165552
Total number of rows:
54675
Table truncated, full table size
1158 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM525333.CEL.gz
4.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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