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GEO accession:
Sample GSM525355
Query DataSets for GSM525355
Status
Public on Oct 01, 2010
Title
CLL cells BM patient #22
Sample type
RNA
Source name
BM derived CLL cells
Organism
Homo sapiens
Characteristics
cell type: CLL
origin: Bone marrow
patient: patient #22
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted using Qiagen RNA extraction kit
Label
biotin
Label protocol
Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
Hybridization protocol
Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16 hours.
Scan protocol
Affymetrix GeneChip scanner
Description
primary CLL cells
Data processing
Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation
Submission date
Mar 23, 2010
Last update date
Nov 14, 2018
Contact name
Adrian Wiestner
E-mail(s)
[email protected]
Phone
301-594-6855
Organization name
NHLBI/NIH
Department
Hematology Branch
Street address
10 Center Dr
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL570
Series (1)
GSE21029
The lymph node microenvironment promotes B-cell receptor signaling, NF-κB activation, and tumor proliferation in chronic lymphocytic leukemia (CLL)
Relations
Reanalyzed by
GSE122511
Data table header descriptions
ID_REF
VALUE
S10 transformed data.
Data table
ID_REF
VALUE
1007_s_at
1.55294851
1053_at
1.27503852
117_at
1.1707487
121_at
1.28117275
1255_g_at
0.55079926
1294_at
1.46661744
1316_at
0.85419902
1320_at
0.4123429
1405_i_at
0.63613694
1431_at
0.81015357
1438_at
0.649024
1487_at
1.40698514
1494_f_at
0.82703145
1552256_a_at
0.7495124
1552257_a_at
1.32956983
1552258_at
0.6518918
1552261_at
0.67307746
1552263_at
1.48499172
1552264_a_at
1.72848436
1552266_at
0.57737228
Total number of rows:
54675
Table truncated, full table size
1158 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM525355.CEL.gz
4.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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