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GEO accession:
Sample GSM525359
Query DataSets for GSM525359
Status
Public on Oct 01, 2010
Title
CLL cells LN patient #1
Sample type
RNA
Source name
LN derived CLL cells
Organism
Homo sapiens
Characteristics
cell type: CLL
origin: Lymph node
patient: patient #1
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted using Qiagen RNA extraction kit
Label
biotin
Label protocol
Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
Hybridization protocol
Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16 hours.
Scan protocol
Affymetrix GeneChip scanner
Description
primary CLL cells
Data processing
Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation
Submission date
Mar 23, 2010
Last update date
Oct 01, 2010
Contact name
Adrian Wiestner
E-mail(s)
[email protected]
Phone
301-594-6855
Organization name
NHLBI/NIH
Department
Hematology Branch
Street address
10 Center Dr
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL570
Series (1)
GSE21029
The lymph node microenvironment promotes B-cell receptor signaling, NF-κB activation, and tumor proliferation in chronic lymphocytic leukemia (CLL)
Data table header descriptions
ID_REF
VALUE
S10 transformed data.
Data table
ID_REF
VALUE
1007_s_at
1.60615822
1053_at
1.32701025
117_at
1.09146117
121_at
1.13708916
1255_g_at
0.40446337
1294_at
1.8026128
1316_at
0.82010185
1320_at
0.3599041
1405_i_at
1.45636277
1431_at
0.58402436
1438_at
0.58021913
1487_at
1.33187532
1494_f_at
0.77526479
1552256_a_at
0.96055982
1552257_a_at
1.3135716
1552258_at
0.60135798
1552261_at
0.5048106
1552263_at
1.53050642
1552264_a_at
1.51919668
1552266_at
0.59123984
Total number of rows:
54675
Table truncated, full table size
1158 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM525359.CEL.gz
4.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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