|
| Status |
Public on Apr 09, 2010 |
| Title |
muscle_pre-training_rep1 |
| Sample type |
SRA |
| |
|
| Source name |
gluteus medius muscle
|
| Organism |
Equus caballus |
| Characteristics |
tissue: gluteus medius muscle
training timepoint: pre
horse number: 7
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
The Illumina cDNA library was prepared according to the Illumina procotol document "Preparing Samples for Digital Gene Expression-Tag profiling with NlaIII" Part # 11251702 Rev. A (icom.illumina.com).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Description |
NlaIII digested polyA RNA
|
| Data processing |
reps 1-3 were processed using the illumina IPAR v1.01 pipeline. Reps 4-7 were processed using Illumina pipeline v1.4. Tag counts correspond to equCab2 ensembl 49 build.
|
| |
|
| Submission date |
Apr 08, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Paul McGettigan |
| E-mail(s) |
[email protected]
|
| Organization name |
University College Dublin
|
| Department |
School of Agriculture, Food Science and Veterinary Medicine
|
| Lab |
Animal Genomics Laboratory
|
| Street address |
Veterinary Sciences Centre, UCD
|
| City |
Belfield |
| State/province |
Co Dublin |
| ZIP/Postal code |
Dublin 4 |
| Country |
Ireland |
| |
|
| Platform ID |
GPL10300 |
| Series (1) |
| GSE21269 |
Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training |
|
| Relations |
| SRA |
SRX018936 |
| BioSample |
SAMN00011039 |
