|
| Status |
Public on Jul 01, 2022 |
| Title |
T4.Tfh.LCMV.d30.Id3High.Sp#2 |
| Sample type |
SRA |
| |
|
| Source name |
Tfh.Id3-high
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
age: 6-16 Weeks
tissue: Spleen
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted in TRIZoL reagent
PrepX RNA-seq library preperation kit (Integenex)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
Tophat
HT-Seq Count
DESeq from BioConductor
Genome_build: UCSC mm10
Supplementary_files_format_and_content: gct
|
| |
|
| Submission date |
May 28, 2021 |
| Last update date |
Jul 01, 2022 |
| Contact name |
Ananda Goldrath |
| Organization name |
UCSD
|
| Street address |
9500 Gilman Dr
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093-0377 |
| Country |
USA |
| |
|
| Platform ID |
GPL17021 |
| Series (2) |
| GSE175740 |
RNA-seq of memory CD4+ Helper T cell subsets (Th1 and Tfh) during LCMV-Armstrong infection |
| GSE175743 |
LCMV-Armstrong infection |
|
| Relations |
| BioSample |
SAMN19404902 |
| SRA |
SRX11014708 |
