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Sample GSM548561 Query DataSets for GSM548561
Status Public on Jun 03, 2010
Title Mo B
Sample type RNA
 
Source name normal medium
Organism Cereibacter sphaeroides 2.4.1
Characteristics strain: 2.4.1
Growth protocol Photosynthetic conditions (10 W/m2, sealed flasks), normal medium (Mo)
Extracted molecule total RNA
Extraction protocol RNA isolated with bead beater + RNeasy kits
Label biotin
Label protocol according to Affymetrix protocol
 
Hybridization protocol according to Affymetrix protocol
Scan protocol according to Affymetrix protocol
Description Photosynthetic conditions (10 W/m2, sealed flasks), normal medium (Mo)
Data processing RMA processing for corresponding experimental series was used for data analysis and mentioned in the papers; MAS 5.0 values are depositied here for consistensy with other submissions
 
Submission date May 31, 2010
Last update date Jun 02, 2010
Contact name Mark Gomelsky
E-mail(s) [email protected]
Phone 307-766-3522
Organization name University of Wyoming
Department Molecular Biology
Lab Gomelsky
Street address
City Laramie
State/province WY
ZIP/Postal code 82071
Country USA
 
Platform ID GPL162
Series (1)
GSE22063 Transcriptional responses of Rhaodobacter sphaeroides to Tungsten

Data table header descriptions
ID_REF
MAS5 relative signal of expression, MAS 5.0 in-chip scaling to 500
DETECTION_CALL Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
VALUE RMA values of expression

Data table
ID_REF MAS5 DETECTION_CALL VALUE
1 13.4 A 30
2 36.8 A 47
3 4.8 A 25
4 71.8 A 24
5 34.5 A 25
6 11.2 A 23
7 24.2 A 27
8 27.2 A 24
9 16.4 A 28
10 12.2 A 28
11 33.2 A 23
12 6.9 A 23
13 3.1 A 20
14 5.1 A 21
15 4.3 A 21
16 7.6 A 23
17 4.4 A 21
18 46.7 A 24
19 6.2 A 23
20 1.2 A 20

Total number of rows: 5355

Table truncated, full table size 85 Kbytes.




Supplementary file Size Download File type/resource
GSM548561.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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