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Sample GSM5551696 Query DataSets for GSM5551696
Status Public on Sep 30, 2021
Title Gudjonsson_003_003_029021
Sample type RNA
 
Source name Skin
Organism Homo sapiens
Characteristics tissue: Skin
disease state: Psoriasis
Extracted molecule total RNA
Extraction protocol RNA was isolated from 10μm sections of formalin-fixed paraffin embedded blocks of identified skin biopsies. RNA was extracted using the E.N.Z.A. FFPE RNA Kit (Omega Bio-tek).
Label biotin
Label protocol Complementary DNA was prepared and biotinylated using the NuGEN Encore Biotin Module (Encore Biotin Module Manual, P/N M01111 v6).
 
Hybridization protocol Labeled cDNA was hybridized at 48°C to Affymetrix Human Gene ST 2.1 array plates, which were then washed, stained and scanned using the Affymetrix GeneTitan system (software version 3.2.4.1515) with the assistance of the University of Michigan DNA Sequencing Core.
Scan protocol Labeled cDNA was hybridized at 48°C to Affymetrix Human Gene ST 2.1 array plates, which were then washed, stained and scanned using the Affymetrix GeneTitan system (software version 3.2.4.1515) with the assistance of the University of Michigan DNA Sequencing Core.
Data processing R bioconduct was used to process the data, and RMA was used to summarize and normalize the expression values
 
Submission date Aug 31, 2021
Last update date Oct 01, 2021
Contact name Lam Tsoi
E-mail(s) [email protected]
Organization name University of Michigan
Street address Medical Sciences 1 Bldg. 1301 E. Catherine
City Ann Arbor
State/province MI
ZIP/Postal code 48109
Country USA
 
Platform ID GPL30572
Series (1)
GSE183134 Transcriptomic profiling of Pityriasis Rubra Pilaris (PRP) and Psoriasis

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
DDX11L1 4.153131439
MIR1302-2 4.67202759
OR4F5 5.050497684
LOC100132287 5.998401205
LOC105379690 7.065422371
OR4F29 4.938711452
LOC105378947 4.986836165
LOC105378580 5.123131396
LOC100287934 6.339664839
FAM87B 4.164761487
LINC01128 5.331163187
LOC284600 3.7710927
SAMD11 3.520249757
KLHL17 4.475452063
PLEKHN1 4.451850232
ISG15 5.376280028
AGRN 4.449110208
LINC01342 4.584611804
MIR200B 3.062564238
MIR200A 2.881283785

Total number of rows: 29405

Table truncated, full table size 573 Kbytes.




Supplementary file Size Download File type/resource
GSM5551696_Gudjonsson_003_003_029021.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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