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Sample GSM566584 Query DataSets for GSM566584
Status Public on Oct 01, 2011
Title IDFP1
Sample type RNA
 
Source name Mouse liver
Organism Mus musculus
Characteristics strain: Swiss-Webster
age: 7 weeks
gender: Male
tissue: Liver
treatment: isopropoyl dodecyl fluorophosphonate (IDFP) (10 mg/kg, i.p.)
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit including DNase I treatment in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing The data were normalised using quantile normalisation with background substraction in Beadstudio 3.2
 
Submission date Jul 15, 2010
Last update date Oct 01, 2011
Contact name Max Ruby
E-mail(s) [email protected]
Organization name Children's Hospital Oakland Reserach Institue
Lab Krauss
Street address 5700 Martin Luther King Jr. Way
City OAKLAND
State/province CA
ZIP/Postal code 94609
Country USA
 
Platform ID GPL6885
Series (1)
GSE22949 Cannabinoid Receptor 1 Dependent Effects of Isopropoyl dodeycl fluorophosphonate on Hepatic Gene Expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1672.03 0
ILMN_2721178 381.8803 0
ILMN_3033922 1042.908 0
ILMN_3092673 6084.82 0
ILMN_2816356 26.57614 0.05889724
ILMN_2808939 1224.186 0
ILMN_2634564 542.0845 0
ILMN_2737647 22.89579 0.07017544
ILMN_2734484 841.4789 0
ILMN_2952292 122.9555 0
ILMN_2699078 -10.19907 0.7268171
ILMN_1213681 149.8526 0
ILMN_2735413 462.3099 0
ILMN_2735415 680.2411 0
ILMN_2891688 991.632 0
ILMN_2637698 663.0284 0
ILMN_2674228 116.4929 0
ILMN_2601546 4.061885 0.2944862
ILMN_1230831 22.36398 0.07518797
ILMN_2848071 1080 0

Total number of rows: 25697

Table truncated, full table size 751 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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