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Sample GSM566602 Query DataSets for GSM566602
Status Public on Oct 01, 2011
Title DMSO3
Sample type RNA
 
Source name Mouse liver
Organism Mus musculus
Characteristics strain: Swiss-Webster
age: 7 weeks
gender: Male
tissue: Liver
treatment: DMSO
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit including DNase I treatment in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with background substraction in Beadstudio 3.2
 
Submission date Jul 15, 2010
Last update date Oct 01, 2011
Contact name Max Ruby
E-mail(s) [email protected]
Organization name Children's Hospital Oakland Reserach Institue
Lab Krauss
Street address 5700 Martin Luther King Jr. Way
City OAKLAND
State/province CA
ZIP/Postal code 94609
Country USA
 
Platform ID GPL6885
Series (1)
GSE22949 Cannabinoid Receptor 1 Dependent Effects of Isopropoyl dodeycl fluorophosphonate on Hepatic Gene Expression

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2019.162 0
ILMN_2721178 389.6916 0
ILMN_3033922 1038.693 0
ILMN_3092673 8176.503 0
ILMN_2816356 27.67549 0.05137845
ILMN_2808939 1087.888 0
ILMN_2634564 585.5344 0
ILMN_2737647 11.52928 0.1741855
ILMN_2734484 1229.012 0
ILMN_2952292 100.8299 0
ILMN_2699078 -9.109419 0.6954888
ILMN_1213681 119.1216 0
ILMN_2735413 466.237 0
ILMN_2735415 525.4906 0
ILMN_2891688 670.188 0
ILMN_2637698 623.3328 0
ILMN_2674228 130.6684 0
ILMN_2601546 26.11809 0.05513784
ILMN_1230831 0.7463847 0.3621554
ILMN_2848071 738.1978 0

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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