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Sample GSM572173

Query DataSets for GSM572173

Status

Public on Jul 30, 2010

Title

Myers_H1-hESC_cell_1x75D_ilNA_1

Sample type

SRA

Source name

H1-hESC

Organism

Homo sapiens

Characteristics

cell line: H1-hESC
cell organism: Human
cell description: Human Embryonic Stem Cells
cell karyotype: normal
cell lineage: embryonic stem cells
cell sex: M
localization: cell
readtype: 1x75D
insertlength: ilNA
replicate: 1

Biomaterial provider

Cellular Dynamics

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cell/human/H1_ES_protocol.pdf

Extracted molecule

polyA RNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCaltechRnaSeq

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

cDNA

Instrument model

Illumina Genome Analyzer II

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCaltechRnaSeq

Submission date

Jul 29, 2010

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

[email protected]

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9115

Series (1)

GSE23316

ENCODE Caltech RNA-seq

Relations

SRA

SRX026668

BioSample

SAMN00113211

Supplementary file	Size	Download	File type/resource
GSM572173_wgEncodeCaltechRnaSeqAlignsRep1H1hescCellPapBb2R1x75d.bed12.gz	177.2 Mb	(ftp)(http)	BED12
GSM572173_wgEncodeCaltechRnaSeqMinusRawSignalRep1H1hescCellPapBb2R1x75d.bedgraph.gz	20.4 Mb	(ftp)(http)	BEDGRAPH
GSM572173_wgEncodeCaltechRnaSeqPlusRawSignalRep1H1hescCellPapBb2R1x75d.bedgraph.gz	21.1 Mb	(ftp)(http)	BEDGRAPH
GSM572173_wgEncodeCaltechRnaSeqRawData5Rep1H1hescCellPapErng32aR1x75d.rpkm.gz	320.0 Kb	(ftp)(http)	RPKM
GSM572173_wgEncodeCaltechRnaSeqRawData6Rep1H1hescCellPapErng32aR1x75d.rpkm.gz	6.9 Mb	(ftp)(http)	RPKM
GSM572173_wgEncodeCaltechRnaSeqSplicesRep1H1hescCellPapBb2R1x75d.bed12.gz	42.5 Mb	(ftp)(http)	BED12
GSM572173_wgEncodeCaltechRnaSeqSplicesRep1H1hescCellPapBlat34R1x75d.bed12.gz	590.6 Kb	(ftp)(http)	BED12
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA