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GEO accession:
Sample GSM591678
Query DataSets for GSM591678
Status
Public on Sep 11, 2010
Title
Myers_HUVEC_cell_2x75_200_2
Sample type
SRA
Source name
HUVEC
Organism
Homo sapiens
Characteristics
cell line: HUVEC
cell organism: Human
cell description: Human Umbilical Vein Endothelial Cell
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
localization: cell
readtype: 2x75
insertlength: 200
replicate: 2
Biomaterial provider
Lonza
Growth protocol
Cells were grown according to ENCODE cell culture protocols:
http://genome.ucsc.edu/ENCODE/protocols/cell/human/HUVEC_protocol.pdf
Extracted molecule
polyA RNA
Extraction protocol
For extraction protocol details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCaltechRnaSeq
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Illumina Genome Analyzer II
Data processing
For data processing details see:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCaltechRnaSeq
Submission date
Sep 08, 2010
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
[email protected]
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE23316
ENCODE Caltech RNA-seq
Relations
SRA
SRX026687
BioSample
SAMN00113230
Supplementary file
Size
Download
File type/resource
GSM591678_wgEncodeCaltechRnaSeqPairedRep2HuvecCellPapErng32aR2x75.bed12.gz
803.5 Mb
(ftp)
(http)
BED12
GSM591678_wgEncodeCaltechRnaSeqRawData5Rep2HuvecCellPapErng32aR2x75.rpkm.gz
323.1 Kb
(ftp)
(http)
RPKM
GSM591678_wgEncodeCaltechRnaSeqRawData6Rep2HuvecCellPapErng32aR2x75.rpkm.gz
6.9 Mb
(ftp)
(http)
RPKM
GSM591678_wgEncodeCaltechRnaSeqRawSignalRep2HuvecCellPapBb2R2x75.bedgraph.gz
168.1 Mb
(ftp)
(http)
BEDGRAPH
GSM591678_wgEncodeCaltechRnaSeqSplicesRep2HuvecCellPapBb2R2x75.bed12.gz
167.7 Mb
(ftp)
(http)
BED12
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA
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