 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Apr 06, 2022 |
| Title |
1667_M_fl/fl_fast |
| Sample type |
SRA |
| |
|
| Source name |
Liver
|
| Organism |
Mus musculus |
| Characteristics |
diet: Fasted
genotype: Control
|
| Extracted molecule |
total RNA |
| Extraction protocol |
oligo-dT
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Basecalling with Illumina RTA 1.9
Demultiplexing with Illumina bcl2fastq2
Fastq files were combined and aligned with STAR 2.5.1a
Gene counts quantitated with Subread:featureCount 1.4.6-p5 with CPM and RPKM transformations added with custom Rscripting.
Assembly: Ensembl GRCm38.76
Supplementary files format and content: Gene counts with CPM and RPKM in tab-delimitted text format
|
| |
|
| Submission date |
Apr 01, 2022 |
| Last update date |
Apr 07, 2022 |
| Contact name |
Brian Finck |
| Organization name |
Washington University School of Medicine
|
| Street address |
660 Euclid Ave
|
| City |
St. Louis |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE199975 |
Silencing alanine transaminase 2 in diabetic liver attenuates hyperglycemia by reducing gluconeogenesis from amino acids |
|
| Relations |
| BioSample |
SAMN27181966 |
| SRA |
SRX14697432 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM6000707_1667_m_fl.fl_fast.CACAGTAGGC-GAGTGTAATG.gene_counts.txt.gz |
2.6 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
