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Status |
Public on Apr 06, 2022 |
Title |
1023_M_fl/fl_fast |
Sample type |
SRA |
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Source name |
Liver
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Organism |
Mus musculus |
Characteristics |
diet: Fasted genotype: Control
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Extracted molecule |
total RNA |
Extraction protocol |
oligo-dT
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
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Data processing |
Basecalling with Illumina RTA 1.9 Demultiplexing with Illumina bcl2fastq2 Fastq files were combined and aligned with STAR 2.5.1a Gene counts quantitated with Subread:featureCount 1.4.6-p5 with CPM and RPKM transformations added with custom Rscripting. Assembly: Ensembl GRCm38.76 Supplementary files format and content: Gene counts with CPM and RPKM in tab-delimitted text format
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Submission date |
Apr 01, 2022 |
Last update date |
Apr 07, 2022 |
Contact name |
Brian Finck |
Organization name |
Washington University School of Medicine
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Street address |
660 Euclid Ave
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City |
St. Louis |
ZIP/Postal code |
63110 |
Country |
USA |
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Platform ID |
GPL24247 |
Series (1) |
GSE199975 |
Silencing alanine transaminase 2 in diabetic liver attenuates hyperglycemia by reducing gluconeogenesis from amino acids |
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Relations |
BioSample |
SAMN27181964 |
SRA |
SRX14697434 |
Supplementary file |
Size |
Download |
File type/resource |
GSM6000709_1023_m_fl.fl_fast.CGATCCGCTT-GCAATGATGC.gene_counts.txt.gz |
2.7 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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