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Sample GSM6000709 Query DataSets for GSM6000709
Status Public on Apr 06, 2022
Title 1023_M_fl/fl_fast
Sample type SRA
 
Source name Liver
Organism Mus musculus
Characteristics diet: Fasted
genotype: Control
Extracted molecule total RNA
Extraction protocol oligo-dT
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing Basecalling with Illumina RTA 1.9
Demultiplexing with Illumina bcl2fastq2
Fastq files were combined and aligned with STAR 2.5.1a
Gene counts quantitated with Subread:featureCount 1.4.6-p5 with CPM and RPKM transformations added with custom Rscripting.
Assembly: Ensembl GRCm38.76
Supplementary files format and content: Gene counts with CPM and RPKM in tab-delimitted text format
 
Submission date Apr 01, 2022
Last update date Apr 07, 2022
Contact name Brian Finck
Organization name Washington University School of Medicine
Street address 660 Euclid Ave
City St. Louis
ZIP/Postal code 63110
Country USA
 
Platform ID GPL24247
Series (1)
GSE199975 Silencing alanine transaminase 2 in diabetic liver attenuates hyperglycemia by reducing gluconeogenesis from amino acids
Relations
BioSample SAMN27181964
SRA SRX14697434

Supplementary file Size Download File type/resource
GSM6000709_1023_m_fl.fl_fast.CGATCCGCTT-GCAATGATGC.gene_counts.txt.gz 2.7 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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