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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 06, 2022 |
| Title |
2166_M_KO_fed |
| Sample type |
SRA |
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| Source name |
Liver
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| Organism |
Mus musculus |
| Characteristics |
diet: Fed
genotype: LSALT2KO
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| Extracted molecule |
total RNA |
| Extraction protocol |
oligo-dT
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
Basecalling with Illumina RTA 1.9
Demultiplexing with Illumina bcl2fastq2
Fastq files were combined and aligned with STAR 2.5.1a
Gene counts quantitated with Subread:featureCount 1.4.6-p5 with CPM and RPKM transformations added with custom Rscripting.
Assembly: Ensembl GRCm38.76
Supplementary files format and content: Gene counts with CPM and RPKM in tab-delimitted text format
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| Submission date |
Apr 01, 2022 |
| Last update date |
Apr 07, 2022 |
| Contact name |
Brian Finck |
| Organization name |
Washington University School of Medicine
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| Street address |
660 Euclid Ave
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| City |
St. Louis |
| ZIP/Postal code |
63110 |
| Country |
USA |
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| Platform ID |
GPL24247 |
| Series (1) |
| GSE199975 |
Silencing alanine transaminase 2 in diabetic liver attenuates hyperglycemia by reducing gluconeogenesis from amino acids |
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| Relations |
| BioSample |
SAMN27181957 |
| SRA |
SRX14697441 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM6000716_2166_m_ko_fed.TCCATCTATG-GACAGCAGCT.gene_counts.txt.gz |
2.6 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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