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Sample GSM602284 Query DataSets for GSM602284
Status Public on Nov 21, 2010
Title CGH: GBM_case31
Sample type genomic
 
Channel 1
Source name brain
Organism Homo sapiens
Characteristics age: 53 y
tissue: brain glioblastoma tumor
gender: male
Growth protocol GBM specimen from operation room were quickly frozen for assay
Extracted molecule genomic DNA
Extraction protocol phenol chloroform
Label Cy5
Label protocol standard Agilent CGH directly labeling protocol
 
Channel 2
Source name normal human genomic DNA-Roche
Organism Homo sapiens
Characteristics sample type: normal human genomic DNA-Roche
Growth protocol GBM specimen from operation room were quickly frozen for assay
Extracted molecule genomic DNA
Extraction protocol phenol chloroform
Label Cy3
Label protocol standard Agilent CGH directly labeling protocol
 
 
Hybridization protocol standard Agilent CGH protocol
Scan protocol standard Agilent protocol.
Data processing standard Agilent protocol.
 
Submission date Sep 29, 2010
Last update date Oct 06, 2010
Contact name Viviane Tabar
E-mail(s) [email protected]
Phone 212-639-8249
Organization name MSKCC
Department neurosurgery
Lab Viviane Tabar
Street address 411 east 67th street
City new york
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL8736
Series (2)
GSE24446 Genetic abnormalities in GBM brain tumors
GSE24558 GBM brain tumors

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 -2.866032467e-002
2 0.000000000e+000
3 0.000000000e+000
4 -2.084288956e-003
5 -1.464107759e-001
6 5.144601477e-002
7 1.602408976e-001
8 1.444693623e-001
9 2.779507792e-001
10 -2.538338878e-002
11 -3.136892880e-002
12 1.857690088e-001
13 1.512330633e-001
14 2.903703195e-001
15 2.351943117e-002
16 1.645699439e-001
17 2.730205959e-001
18 -1.856668049e-001
19 2.902122376e-002
20 -2.528335358e-002

Total number of rows: 974016

Table truncated, full table size 23165 Kbytes.




Supplementary file Size Download File type/resource
GSM602284_CB_TB589_slide208_S01_CGH-v4_10_27Aug08.txt.gz 293.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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