GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM6038526

Query DataSets for GSM6038526

Status

Public on Apr 12, 2022

Title

51_Stroma

Sample type

protein

Source name

FFPE Resected Tumour

Organism

Homo sapiens

Characteristics

tissue: FFPE Resected Tumour
type: Nodal Met Only
followup(days): 730
current status: ALIVE

Extracted molecule

protein

Extraction protocol

Commercial HNSCC TMA was analysed by GeoMX DSP. Antibody incubations and Ncounter readout were performed as per standardised Nanostring GeoMX DSP protocol

Label

DNA barcode

Label protocol

n/a

Hybridization protocol

n/a

Scan protocol

n/a

Description

GeoMx DSP Ncounter

Data processing

Ncounter data was exported and normalised by RUVseq. Differential expression was performed between primary and metastatic samples

Submission date

Apr 11, 2022

Last update date

Apr 12, 2022

Contact name

Arutha Kulasinghe

E-mail(s)

[email protected]

Organization name

University of Queensland

Street address

37 kent st

City

brisbane

ZIP/Postal code

4102

Country

Australia

Platform ID

GPL29263

Series (1)

GSE200601

Dissecting tissue compartment-specific protein signatures in primary and metastatic oropharyngeal squamous cell carcinomas

Data table header descriptions
ID_REF
VALUE	processed value

Data table
ID_REF	VALUE
Ms IgG1	147.74
CD11c	1238.36
S6	5852.23
CD4	442.49
Ki-67	227.28
PD-1	83.51
Rb IgG	201.00
Histone H3	8122.96
PD-L1	12.72
HLA-DR	991.24
Beta-2-microglobulin	386.98
CD3	216.41
PanCk	1037.57
Ms IgG2a	33.07
CD68	1086.83
CTLA4	28.48
CD20	97.64
SMA	64576.45
CD56	238.31
CD45	2227.03

Total number of rows: 68

Table truncated, full table size <1 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

Processed data are available on Series record