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Sample GSM6038554

Query DataSets for GSM6038554

Status

Public on Apr 12, 2022

Title

37_Stroma

Sample type

protein

Source name

FFPE Resected Tumour

Organism

Homo sapiens

Characteristics

tissue: FFPE Resected Tumour
type: Primary Only
followup(days): 3164
current status: ALIVE

Extracted molecule

protein

Extraction protocol

Commercial HNSCC TMA was analysed by GeoMX DSP. Antibody incubations and Ncounter readout were performed as per standardised Nanostring GeoMX DSP protocol

Label

DNA barcode

Label protocol

n/a

Hybridization protocol

n/a

Scan protocol

n/a

Description

GeoMx DSP Ncounter

Data processing

Ncounter data was exported and normalised by RUVseq. Differential expression was performed between primary and metastatic samples

Submission date

Apr 11, 2022

Last update date

Apr 12, 2022

Contact name

Arutha Kulasinghe

E-mail(s)

[email protected]

Organization name

University of Queensland

Street address

37 kent st

City

brisbane

ZIP/Postal code

4102

Country

Australia

Platform ID

GPL29263

Series (1)

GSE200601

Dissecting tissue compartment-specific protein signatures in primary and metastatic oropharyngeal squamous cell carcinomas

Data table header descriptions
ID_REF
VALUE	processed value

Data table
ID_REF	VALUE
Ms IgG1	182.60
CD11c	569.26
S6	5757.09
CD4	489.97
Ki-67	264.63
PD-1	159.44
Rb IgG	284.80
Histone H3	9991.42
PD-L1	9.00
HLA-DR	1208.91
Beta-2-microglobulin	398.24
CD3	639.29
PanCk	1814.12
Ms IgG2a	47.71
CD68	759.32
CTLA4	25.83
CD20	167.07
SMA	92048.58
CD56	523.58
CD45	2875.18

Total number of rows: 68

Table truncated, full table size <1 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

Processed data are available on Series record