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Sample GSM609142

Query DataSets for GSM609142

Status

Public on Jan 09, 2011

Title

mys1-M-1

Sample type

RNA

Source name

Adult w1118, whole fly

Organism

Drosophila melanogaster

Characteristics

Sex: M
strain: mysore
strain.rep: mys1
batch: 1

Extracted molecule

total RNA

Extraction protocol

Trizol (Invitrogen) extraction and RNeasy (Qiagen) purification

Label

biotin

Label protocol

Affymetrix GeneChip IVT Labeling Kit, standard manufacturer's protocol

Hybridization protocol

Affymetrix Eukaryotic Target Hybridization protocol

Scan protocol

Affymetrix GeneChip Scanner 3000 with GCOS software

Description

M1M-1

Data processing

Probesets pre-processed with vsnrma separately in the two sexes, as implemented in R/Bioconductor package vsn (Variance Stabilization background subtraction and normalization, median-polish summarization)

Submission date

Oct 15, 2010

Last update date

Aug 28, 2018

Contact name

Paolo Innocenti

E-mail(s)

[email protected]

Organization name

Uppsala university

Department

Dept. of Animal Ecology

Lab

Morrow Lab

Street address

Norbyvägen 18D

City

Uppsala

ZIP/Postal code

75236

Country

Sweden

Platform ID

GPL1322

Series (1)

GSE24729

Effect of mitochondria on nuclear gene expression in Drosophila melanogaster

Relations

Reanalyzed by

GSE119084

Data table header descriptions
ID_REF
VALUE	Data stored in log scale to base 2. For more info, see help for function 'vsn2' in the R package vsn.

Data table
ID_REF	VALUE
1616608_a_at	12.9005269
1622892_s_at	9.388841915
1622893_at	12.71406299
1622894_at	8.251532658
1622895_at	7.259887752
1622896_at	8.282366346
1622897_at	6.541785804
1622898_a_at	8.8112365
1622899_at	6.381378836
1622900_at	6.2252143
1622901_at	7.726437809
1622902_at	8.758126206
1622903_s_at	7.681154131
1622904_at	6.773368009
1622905_at	6.119178042
1622906_at	8.094754429
1622907_at	8.669382978
1622908_a_at	7.181183821
1622909_at	8.868877059
1622910_at	6.391669754

Total number of rows: 18952

Table truncated, full table size 432 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM609142.CEL.gz	2.0 Mb	(ftp)(http)	CEL
Processed data included within Sample table
Processed data are available on Series record