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Sample GSM609161

Query DataSets for GSM609161

Status

Public on Jan 09, 2011

Title

jap2-F-2

Sample type

RNA

Source name

Adult w1118, whole fly

Organism

Drosophila melanogaster

Characteristics

Sex: F
strain: japan
strain.rep: jap2
batch: 2

Extracted molecule

total RNA

Extraction protocol

Trizol (Invitrogen) extraction and RNeasy (Qiagen) purification

Label

biotin

Label protocol

Affymetrix GeneChip IVT Labeling Kit, standard manufacturer's protocol

Hybridization protocol

Affymetrix Eukaryotic Target Hybridization protocol

Scan protocol

Affymetrix GeneChip Scanner 3000 with GCOS software

Description

J2F-2

Data processing

Probesets pre-processed with vsnrma separately in the two sexes, as implemented in R/Bioconductor package vsn (Variance Stabilization background subtraction and normalization, median-polish summarization)

Submission date

Oct 15, 2010

Last update date

Aug 28, 2018

Contact name

Paolo Innocenti

E-mail(s)

[email protected]

Organization name

Uppsala university

Department

Dept. of Animal Ecology

Lab

Morrow Lab

Street address

Norbyvägen 18D

City

Uppsala

ZIP/Postal code

75236

Country

Sweden

Platform ID

GPL1322

Series (1)

GSE24729

Effect of mitochondria on nuclear gene expression in Drosophila melanogaster

Relations

Reanalyzed by

GSE119084

Data table header descriptions
ID_REF
VALUE	Data stored in log scale to base 2. For more info, see help for function 'vsn2' in the R package vsn.

Data table
ID_REF	VALUE
1616608_a_at	12.31086993
1622892_s_at	9.351701978
1622893_at	11.42517354
1622894_at	7.647227669
1622895_at	9.731606969
1622896_at	9.023846954
1622897_at	6.551147292
1622898_a_at	10.45951238
1622899_at	6.540878793
1622900_at	6.087400102
1622901_at	7.12973677
1622902_at	7.928308143
1622903_s_at	9.651039429
1622904_at	6.313343187
1622905_at	5.9107557
1622906_at	8.848897153
1622907_at	8.723805091
1622908_a_at	7.852761817
1622909_at	11.10115907
1622910_at	6.15940631

Total number of rows: 18952

Table truncated, full table size 432 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM609161.CEL.gz	1.9 Mb	(ftp)(http)	CEL
Processed data included within Sample table
Processed data are available on Series record