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Sample GSM609163

Query DataSets for GSM609163

Status

Public on Jan 09, 2011

Title

mys1-F-2

Sample type

RNA

Source name

Adult w1118, whole fly

Organism

Drosophila melanogaster

Characteristics

Sex: F
strain: mysore
strain.rep: mys1
batch: 2

Extracted molecule

total RNA

Extraction protocol

Trizol (Invitrogen) extraction and RNeasy (Qiagen) purification

Label

biotin

Label protocol

Affymetrix GeneChip IVT Labeling Kit, standard manufacturer's protocol

Hybridization protocol

Affymetrix Eukaryotic Target Hybridization protocol

Scan protocol

Affymetrix GeneChip Scanner 3000 with GCOS software

Description

M1F-2

Data processing

Probesets pre-processed with vsnrma separately in the two sexes, as implemented in R/Bioconductor package vsn (Variance Stabilization background subtraction and normalization, median-polish summarization)

Submission date

Oct 15, 2010

Last update date

Aug 28, 2018

Contact name

Paolo Innocenti

E-mail(s)

[email protected]

Organization name

Uppsala university

Department

Dept. of Animal Ecology

Lab

Morrow Lab

Street address

Norbyvägen 18D

City

Uppsala

ZIP/Postal code

75236

Country

Sweden

Platform ID

GPL1322

Series (1)

GSE24729

Effect of mitochondria on nuclear gene expression in Drosophila melanogaster

Relations

Reanalyzed by

GSE119084

Data table header descriptions
ID_REF
VALUE	Data stored in log scale to base 2. For more info, see help for function 'vsn2' in the R package vsn.

Data table
ID_REF	VALUE
1616608_a_at	12.38951406
1622892_s_at	9.362811728
1622893_at	11.09071781
1622894_at	7.796064436
1622895_at	9.689693376
1622896_at	8.864912374
1622897_at	6.458599793
1622898_a_at	10.40942693
1622899_at	6.600999341
1622900_at	6.136604391
1622901_at	7.007777638
1622902_at	8.015296497
1622903_s_at	9.601100248
1622904_at	6.327770948
1622905_at	6.013380393
1622906_at	8.661466146
1622907_at	8.653285382
1622908_a_at	7.717738017
1622909_at	11.04255614
1622910_at	6.136893132

Total number of rows: 18952

Table truncated, full table size 432 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM609163.CEL.gz	2.0 Mb	(ftp)(http)	CEL
Processed data included within Sample table
Processed data are available on Series record