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Sample GSM609164

Query DataSets for GSM609164

Status

Public on Jan 09, 2011

Title

mys2-F-1

Sample type

RNA

Source name

Adult w1118, whole fly

Organism

Drosophila melanogaster

Characteristics

Sex: F
strain: mysore
strain.rep: mys2
batch: 1

Extracted molecule

total RNA

Extraction protocol

Trizol (Invitrogen) extraction and RNeasy (Qiagen) purification

Label

biotin

Label protocol

Affymetrix GeneChip IVT Labeling Kit, standard manufacturer's protocol

Hybridization protocol

Affymetrix Eukaryotic Target Hybridization protocol

Scan protocol

Affymetrix GeneChip Scanner 3000 with GCOS software

Description

M2F-1

Data processing

Probesets pre-processed with vsnrma separately in the two sexes, as implemented in R/Bioconductor package vsn (Variance Stabilization background subtraction and normalization, median-polish summarization)

Submission date

Oct 15, 2010

Last update date

Aug 28, 2018

Contact name

Paolo Innocenti

E-mail(s)

[email protected]

Organization name

Uppsala university

Department

Dept. of Animal Ecology

Lab

Morrow Lab

Street address

Norbyvägen 18D

City

Uppsala

ZIP/Postal code

75236

Country

Sweden

Platform ID

GPL1322

Series (1)

GSE24729

Effect of mitochondria on nuclear gene expression in Drosophila melanogaster

Relations

Reanalyzed by

GSE119084

Data table header descriptions
ID_REF
VALUE	Data stored in log scale to base 2. For more info, see help for function 'vsn2' in the R package vsn.

Data table
ID_REF	VALUE
1616608_a_at	11.95807955
1622892_s_at	9.471193192
1622893_at	10.82093907
1622894_at	7.75941116
1622895_at	9.636400307
1622896_at	8.824847609
1622897_at	6.527137765
1622898_a_at	10.52325104
1622899_at	6.546770297
1622900_at	6.29364958
1622901_at	7.076977441
1622902_at	7.69624361
1622903_s_at	9.624019451
1622904_at	6.391146259
1622905_at	6.022535399
1622906_at	8.967910854
1622907_at	8.672361912
1622908_a_at	7.739510212
1622909_at	10.97831194
1622910_at	6.276367915

Total number of rows: 18952

Table truncated, full table size 432 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM609164.CEL.gz	1.9 Mb	(ftp)(http)	CEL
Processed data included within Sample table
Processed data are available on Series record