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Sample GSM612015 Query DataSets for GSM612015
Status Public on Feb 09, 2017
Title genomic DNA from white adipose tissue nonobese_13
Sample type genomic
 
Source name 13
Organism Homo sapiens
Characteristics gender: Female
tissue type: abdominal subcutaneous adipose tissue
disease state: Nonobese
age: 68
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from adipose tissue using standard protocol.
Label Cy5 and Cy3
Label protocol 1 μg of genomic DNA was subjected to bisulphite conversion with the EZ DNA Methylation kit (Zymo research, Orange, CA)
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Description 4690141028_I
Data processing BeadStudio software v3.2
 
Submission date Oct 22, 2010
Last update date Feb 09, 2017
Contact name Ingrid Dahlman
E-mail(s) [email protected]
Organization name Karolinska
Street address Karolinska Huddinge
City Stockholm
ZIP/Postal code 14186
Country Sweden
 
Platform ID GPL8490
Series (1)
GSE24884 Methylation RIKEN-cohort

Data table header descriptions
ID_REF
VALUE Average Beta
4690141028_I.Detection Pval

Data table
ID_REF VALUE 4690141028_I.Detection Pval
cg00000292 0.3900975 3.68E-38
cg00002426 0.4616896 4.92E-33
cg00003994 0.08088548 3.68E-38
cg00005847 0.7488898 3.68E-38
cg00006414 0.103139 3.68E-38
cg00007981 0.04251993 3.68E-38
cg00008493 0.9614484 3.68E-38
cg00008713 0.0306797 3.68E-38
cg00009407 0.02907057 3.68E-38
cg00010193 0.570826 3.68E-38
cg00011459 0.6454265 0.02861167
cg00012199 0.02674095 3.68E-38
cg00012386 0.0227879 3.68E-38
cg00012792 0.02190975 3.68E-38
cg00013618 0.8617476 3.68E-38
cg00014085 0.03306478 3.68E-38
cg00014837 0.7297521 1.78E-05
cg00015770 0.06008741 3.68E-38
cg00016968 0.6194105 3.68E-38
cg00019495 0.3125 7.73E-33

Total number of rows: 27578

Table truncated, full table size 821 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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