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Sample GSM61919

Query DataSets for GSM61919

Status

Public on Jun 22, 2005

Title

Giessen_doxyR_A

Sample type

RNA

Source name

Rhodobacter sphaeroides

Organism

Cereibacter sphaeroides

Characteristics

n/a

Treatment protocol

n/a

Growth protocol

The cells were cultivated at 32 °C in malate minimal salt medium under semiaerobic conditions (approx. 0.85 mg l-1 dissolved oxygen) with continuous shaking at 140 rpm.

Extracted molecule

total RNA

Extraction protocol

Cells (at OD600~0.5) were collected by centrifugation. Total RNA was isolated by the hot phenol method, quantified by spectrophotometric analysis (A260).

Label

n/a

Description

control for dOxyR strain (no stress)

Data processing

MAS 5.0 (CEL files for alternative processing are available)

Submission date

Jun 20, 2005

Last update date

Jun 21, 2005

Contact name

Mark Gomelsky

E-mail(s)

[email protected]

Phone

307-766-3522

Organization name

University of Wyoming

Department

Molecular Biology

Lab

Gomelsky

Street address

City

Laramie

State/province

ZIP/Postal code

82071

Country

USA

Platform ID

GPL162

Series (1)

GSE2829

Regulation of hydrogen peroxide-dependent gene expression in Rhodobacter sphaeroides: Regulatory functions of OxyR

Data table header descriptions
ID_REF
VALUE	relative signal of expression
ABS_CALL	Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
DETECTION P-VALUE	stat. significance of detection
Stat Pairs	pairs of PM-MM present on chip
Stat Pairs Used	pairs of PM-MM used in analysis

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE	Stat Pairs	Stat Pairs Used
1	1.9	A	0.921094	14	14
2	4.1	A	0.586954	14	14
3	1.1	A	0.966323	20	20
4	1.8	A	0.724854	20	20
5	1	A	0.969024	20	20
6	0.6	A	0.992951	20	19
7	0.9	A	0.712257	20	20
8	0.8	A	0.914381	20	19
9	1.2	A	0.88447	20	18
10	7.1	A	0.287743	20	20
11	1.7	A	0.814869	20	20
12	0.7	A	0.921998	20	20
13	0.4	A	0.904333	20	20
14	0.4	A	0.997977	20	20
15	0.1	A	0.99238	20	20
16	0.1	A	0.897835	20	20
17	0.5	A	0.852061	20	20
18	1.1	A	0.963431	20	20
19	0.5	A	0.645547	20	20
20	0.7	A	0.883887	20	20

Total number of rows: 5355

Table truncated, full table size 142 Kbytes.

Supplementary data files not provided