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GEO accession:
Sample GSM6197
Query DataSets for GSM6197
Status
Public on Sep 12, 2003
Title
m1-adenoma1
Sample type
RNA
Source name
Ileum epithelials cells
Organism
Mus musculus
Extracted molecule
total RNA
Description
Cells captured via Arcturus LCM system, amplified (RiboAmp, 2 rounds) and labeled (Enzo) for hybridizaton to Affymetrix MG_U74Av2 arrays, using manufacturers protocols in each step.
Submission date
Apr 30, 2003
Last update date
Mar 10, 2006
Contact name
Matthew Feldman
E-mail(s)
[email protected]
Phone
574-631-3539
Fax
574-631-4048
Organization name
University of Notre Dame
Department
Chemistry and Biochemistry
Lab
Keck Center for Transgene Research
Street address
251 Nieuwland Science Hall
City
Notre Dame
State/province
IN
ZIP/Postal code
46556
Country
USA
Platform ID
GPL81
Series (1)
GSE422
Epithelium transition profile
Data table header descriptions
ID_REF
Stat_Pairs
Number of probe pairs for a particular probe set
Stat_Pairs_Used
Number of probe pairs per probe set used in the analysis
VALUE
Signal
ABS_CALL
Present or marginal or absent
Detection_p-value
P-value associated with detection call
Data table
ID_REF
Stat_Pairs
Stat_Pairs_Used
VALUE
ABS_CALL
Detection_p-value
AFFX-MurIL2_at
20
20
20.2
A
0.659339
AFFX-MurIL10_at
20
20
8.9
A
0.824672
AFFX-MurIL4_at
20
20
42.5
A
0.300606
AFFX-MurFAS_at
20
20
114
A
0.062929
AFFX-BioB-5_at
20
20
781.4
P
0.000857
AFFX-BioB-M_at
20
20
1797.1
P
0.000044
AFFX-BioB-3_at
20
20
1351.2
P
0.000044
AFFX-BioC-5_at
20
20
3215.1
P
0.000052
AFFX-BioC-3_at
20
20
2027.8
P
0.000044
AFFX-BioDn-5_at
20
20
2790.6
P
0.00006
AFFX-BioDn-3_at
20
20
7798.1
P
0.000044
AFFX-CreX-5_at
20
20
30134.2
P
0.000044
AFFX-CreX-3_at
20
20
26670.5
P
0.000044
AFFX-BioB-5_st
20
20
101.1
A
0.116113
AFFX-BioB-M_st
20
20
140.8
A
0.139482
AFFX-BioB-3_st
20
20
197.5
A
0.216524
AFFX-BioC-5_st
20
20
18.5
A
0.868639
AFFX-BioC-3_st
20
20
73.3
A
0.287743
AFFX-BioDn-5_st
20
20
255.3
P
0.033677
AFFX-BioDn-3_st
20
20
299.1
P
0.006187
Total number of rows:
12488
Table truncated, full table size
393 Kbytes
.
Supplementary data files not provided
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