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Sample GSM62270 Query DataSets for GSM62270
Status Public on Aug 12, 2005
Title P142 pheochromocytoma
Sample type RNA
 
Source name flash-frozen tumor specimen
Organism Homo sapiens
Characteristics tumor type: pheochromocytoma
genetic class: VHL
tumor location: adrenal
Extracted molecule total RNA
Extraction protocol Trizol as described in Monti S et al. Blood. 2005 Mar 1;105(5):1851-61.
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description sample: P142
Data processing Affymetrix Microarray Suite version 5.0 and dChip.
 
Submission date Jun 27, 2005
Last update date Apr 13, 2010
Contact name Patricia L. Dahia
E-mail(s) [email protected]
Phone 210 5674866
Organization name UTHSCSA
Department Medicine/Cel&Struct Biology
Street address 7703 Floyd Curl Dr MC7880
City San Antonio
State/province TX
ZIP/Postal code 78229
Country USA
 
Platform ID GPL96
Series (2)
GSE2841 Expression Profiling of pheochromocytomas of various genetic origins
GSE19987 Germline Mutations in TMEM127 Confer Susceptibility to Pheochromocytoma

Data table header descriptions
ID_REF probe set
VALUE dChip normalized and modelled signal intensity
ABS_CALL MAS 5.0 Detection Call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1435.08 P
AFFX-BioB-M_at 1687.8 P
AFFX-BioB-3_at 2008.72 P
AFFX-BioC-5_at 2818.41 P
AFFX-BioC-3_at 3529.59 P
AFFX-BioDn-5_at 2976.26 P
AFFX-BioDn-3_at 9886.37 P
AFFX-CreX-5_at 14238.1 P
AFFX-CreX-3_at 20139.5 P
AFFX-DapX-5_at 40.0657 A
AFFX-DapX-M_at 46.9102 A
AFFX-DapX-3_at 22.7532 A
AFFX-LysX-5_at 40.3254 A
AFFX-LysX-M_at 127.23 A
AFFX-LysX-3_at 47.9081 A
AFFX-PheX-5_at 54.4253 A
AFFX-PheX-M_at 37.5299 A
AFFX-PheX-3_at 177.159 A
AFFX-ThrX-5_at 119.737 A
AFFX-ThrX-M_at 39.9145 A

Total number of rows: 22283

Table truncated, full table size 453 Kbytes.




Supplementary file Size Download File type/resource
GSM62270.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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