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Sample GSM62279 Query DataSets for GSM62279
Status Public on Aug 12, 2005
Title P204 pheochromocytoma
Sample type RNA
 
Source name flash-frozen tumor specimen
Organism Homo sapiens
Characteristics tumor type: pheochromocytoma
genetic class: SPOR
tumor location: adrenal
Extracted molecule total RNA
Extraction protocol Trizol as described in Monti S et al. Blood. 2005 Mar 1;105(5):1851-61.
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description sample: P204
Data processing Affymetrix Microarray Suite version 5.0 and dChip.
 
Submission date Jun 27, 2005
Last update date Apr 13, 2010
Contact name Patricia L. Dahia
E-mail(s) [email protected]
Phone 210 5674866
Organization name UTHSCSA
Department Medicine/Cel&Struct Biology
Street address 7703 Floyd Curl Dr MC7880
City San Antonio
State/province TX
ZIP/Postal code 78229
Country USA
 
Platform ID GPL96
Series (2)
GSE2841 Expression Profiling of pheochromocytomas of various genetic origins
GSE19987 Germline Mutations in TMEM127 Confer Susceptibility to Pheochromocytoma

Data table header descriptions
ID_REF probe set
VALUE dChip normalized and modelled signal intensity
ABS_CALL MAS 5.0 Detection Call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1217.41 P
AFFX-BioB-M_at 1218.3 P
AFFX-BioB-3_at 1246.99 P
AFFX-BioC-5_at 2136.56 P
AFFX-BioC-3_at 1550.58 P
AFFX-BioDn-5_at 1349.04 P
AFFX-BioDn-3_at 5743.57 P
AFFX-CreX-5_at 8880.29 P
AFFX-CreX-3_at 12311.1 P
AFFX-DapX-5_at 40.2026 P
AFFX-DapX-M_at 21.2427 A
AFFX-DapX-3_at 33.8058 A
AFFX-LysX-5_at 14.9642 A
AFFX-LysX-M_at 122.464 A
AFFX-LysX-3_at 65.9167 A
AFFX-PheX-5_at 45.1401 A
AFFX-PheX-M_at 21.8917 A
AFFX-PheX-3_at 207.013 A
AFFX-ThrX-5_at 91.4951 A
AFFX-ThrX-M_at 18.6401 A

Total number of rows: 22283

Table truncated, full table size 453 Kbytes.




Supplementary file Size Download File type/resource
GSM62279.CEL.gz 3.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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