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GEO accession:
Sample GSM62737
Query DataSets for GSM62737
Status
Public on May 22, 2007
Title
C3 ctrl kidney 4 months No. 8
Sample type
RNA
Source name
Kidney
Organism
Rattus norvegicus
Characteristics
ctrl kidney 4 months
Treatment protocol
Extracted molecule
total RNA
Extraction protocol
Clonetech
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
C3 ctrl kidney 4 months
Data processing
Affymetrix Microarray Suite version 5.0 followed by GEA
Submission date
Jun 29, 2005
Last update date
May 22, 2007
Contact name
James Holzwarth
E-mail(s)
[email protected]
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL85
Series (2)
GSE2852
Ochratoxin A study on rat liver and kidney gene expression
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
2.24234
A
0.824672
AFFX-MurIL10_at
6.94049
A
0.48511
AFFX-MurIL4_at
1.13138
A
0.852061
AFFX-MurFAS_at
2.89805
A
0.544587
AFFX-BioB-5_at
67.5827
P
0.0396608
AFFX-BioB-M_at
83.729
P
0.00141043
AFFX-BioB-3_at
69.4493
P
0.002867
AFFX-BioC-5_at
141.402
P
0.000389797
AFFX-BioC-3_at
98.7969
P
0.000389797
AFFX-BioDn-5_at
131.523
P
0.00141043
AFFX-BioDn-3_at
880.385
P
0.000445901
AFFX-CreX-5_at
1447.01
P
4.43E-05
AFFX-CreX-3_at
2476.88
P
4.43E-05
AFFX-BioB-5_st
38.214
A
0.083592
AFFX-BioB-M_st
21.9709
A
0.313723
AFFX-BioB-3_st
4.24443
A
0.883887
AFFX-BioC-5_st
3.02185
A
0.868639
AFFX-BioC-3_st
1.90482
A
0.868639
AFFX-BioDn-5_st
18.8915
A
0.382599
AFFX-BioDn-3_st
31.5941
A
0.165861
Total number of rows:
8799
Table truncated, full table size
284 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62737.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
GSM62737.EXP.gz
488 b
(ftp)
(http)
EXP
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