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Sample GSM62744 Query DataSets for GSM62744
Status Public on May 22, 2007
Title T7 OTA kidney 7 days No. 15
Sample type RNA
 
Source name Kidney
Organism Rattus norvegicus
Characteristics OTA kidney 7 days
Treatment protocol Male Fischer 344 rats were administered Ochratoxin A (OTA) through the diet over two years. The initial daily dietary intake was 300 mg OTA/kg bw, but was held at 100 mg/rat after animal reached 333 g.
Extracted molecule total RNA
Extraction protocol Clonetech
Label biotin
Label protocol 5 ug of cRNA was used to make biotinylated RNA
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description T7 OTA kidney 7 days
Data processing Affymetrix Microarray Suite version 5.0 followed by GEA
 
Submission date Jun 29, 2005
Last update date May 22, 2007
Contact name James Holzwarth
E-mail(s) [email protected]
Phone +41 21 785 8909
Organization name Nestle Research Center
Department Bioanalytical Sciences
Street address vers chez les blanc
City Lausanne
State/province Vaud
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL85
Series (2)
GSE2852 Ochratoxin A study on rat liver and kidney gene expression
GSE3304 Comparison of gene expression in conventional and germ-free intestine

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.72408 A 0.852061
AFFX-MurIL10_at 11.0718 A 0.382599
AFFX-MurIL4_at 2.35836 A 0.672921
AFFX-MurFAS_at 3.55933 A 0.574044
AFFX-BioB-5_at 87.8721 P 0.00687065
AFFX-BioB-M_at 154.775 P 7.01E-05
AFFX-BioB-3_at 98.001 P 0.00010954
AFFX-BioC-5_at 240.416 P 0.000146581
AFFX-BioC-3_at 114.921 P 0.00010954
AFFX-BioDn-5_at 178.832 P 0.000389797
AFFX-BioDn-3_at 742.741 P 9.45E-05
AFFX-CreX-5_at 2198.94 P 4.43E-05
AFFX-CreX-3_at 3729.88 P 4.43E-05
AFFX-BioB-5_st 27.1808 A 0.108979
AFFX-BioB-M_st 19.567 A 0.239063
AFFX-BioB-3_st 2.99405 A 0.9273
AFFX-BioC-5_st 3.10583 A 0.876428
AFFX-BioC-3_st 1.20964 A 0.814869
AFFX-BioDn-5_st 12.9312 A 0.275146
AFFX-BioDn-3_st 23.6892 A 0.250796

Total number of rows: 8799

Table truncated, full table size 284 Kbytes.




Supplementary file Size Download File type/resource
GSM62744.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM62744.EXP.gz 487 b (ftp)(http) EXP

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