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Sample GSM62751 Query DataSets for GSM62751
Status Public on May 22, 2007
Title T7_5 OTA liver 7 days No. 22
Sample type RNA
 
Source name Liver
Organism Rattus norvegicus
Characteristics OTA liver 7 days
Treatment protocol Male Fischer 344 rats were administered Ochratoxin A (OTA) through the diet over two years. The initial daily dietary intake was 300 mg OTA/kg bw, but was held at 100 mg/rat after animal reached 333 g.
Extracted molecule total RNA
Extraction protocol Clonetech
Label biotin
Label protocol 5 ug of cRNA was used to make biotinylated RNA
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description T7_5 OTA liver 7 days
Data processing Affymetrix Microarray Suite version 5.0 followed by GEA
 
Submission date Jun 29, 2005
Last update date May 22, 2007
Contact name James Holzwarth
E-mail(s) [email protected]
Phone +41 21 785 8909
Organization name Nestle Research Center
Department Bioanalytical Sciences
Street address vers chez les blanc
City Lausanne
State/province Vaud
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL85
Series (2)
GSE2852 Ochratoxin A study on rat liver and kidney gene expression
GSE3304 Comparison of gene expression in conventional and germ-free intestine

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.61026 A 0.852061
AFFX-MurIL10_at 1.92994 A 0.772364
AFFX-MurIL4_at 0.571106 A 0.996788
AFFX-MurFAS_at 1.39759 A 0.699394
AFFX-BioB-5_at 52.6342 A 0.0956669
AFFX-BioB-M_at 136.456 P 0.000445901
AFFX-BioB-3_at 88.167 P 0.000389797
AFFX-BioC-5_at 224.56 P 0.00010954
AFFX-BioC-3_at 127.406 P 7.01E-05
AFFX-BioDn-5_at 177.074 P 0.00110197
AFFX-BioDn-3_at 1080.23 P 0.000169227
AFFX-CreX-5_at 2498.13 P 4.43E-05
AFFX-CreX-3_at 3589.91 P 4.43E-05
AFFX-BioB-5_st 37.3962 A 0.0894781
AFFX-BioB-M_st 20.5833 A 0.39692
AFFX-BioB-3_st 5.22174 A 0.737173
AFFX-BioC-5_st 3.19615 A 0.937071
AFFX-BioC-3_st 1.41084 A 0.904333
AFFX-BioDn-5_st 37.3282 A 0.108979
AFFX-BioDn-3_st 56.3384 A 0.0726999

Total number of rows: 8799

Table truncated, full table size 282 Kbytes.




Supplementary file Size Download File type/resource
GSM62751.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM62751.EXP.gz 479 b (ftp)(http) EXP

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