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Sample GSM62769 Query DataSets for GSM62769
Status Public on May 22, 2007
Title T6 OTA kidney 4 months No. 40
Sample type RNA
 
Source name Kidney
Organism Rattus norvegicus
Characteristics OTA kidney 4 months
Treatment protocol Male Fischer 344 rats were administered Ochratoxin A (OTA) through the diet over two years. The initial daily dietary intake was 300 mg OTA/kg bw, but was held at 100 mg/rat after animal reached 333 g.
Extracted molecule total RNA
Extraction protocol Clonetech
Label biotin
Label protocol 5 ug of cRNA was used to make biotinylated RNA
 
Hybridization protocol standard Affymetrix procedure
Scan protocol standard Affymetrix procedure
Description T6 OTA kidney 4 months

(possibly a duplicate of GSM62768: generated using the CEL file for GSM62768)
Data processing Affymetrix Microarray Suite version 5.0 followed by GEA
 
Submission date Jun 29, 2005
Last update date May 22, 2007
Contact name James Holzwarth
E-mail(s) [email protected]
Phone +41 21 785 8909
Organization name Nestle Research Center
Department Bioanalytical Sciences
Street address vers chez les blanc
City Lausanne
State/province Vaud
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL85
Series (2)
GSE2852 Ochratoxin A study on rat liver and kidney gene expression
GSE3304 Comparison of gene expression in conventional and germ-free intestine

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 0.82121 A 0.941556
AFFX-MurIL10_at 2.0592 A 0.544587
AFFX-MurIL4_at 0.478935 A 0.941556
AFFX-MurFAS_at 0.985947 A 0.804734
AFFX-BioB-5_at 60.1477 P 0.026111
AFFX-BioB-M_at 121.148 P 0.000126798
AFFX-BioB-3_at 65.1953 P 0.000972149
AFFX-BioC-5_at 166.368 P 0.000126798
AFFX-BioC-3_at 113.765 P 0.000224668
AFFX-BioDn-5_at 222.771 P 0.000509415
AFFX-BioDn-3_at 1042.33 P 8.14E-05
AFFX-CreX-5_at 2403.05 P 4.43E-05
AFFX-CreX-3_at 3811.32 P 4.43E-05
AFFX-BioB-5_st 23.8864 P 0.0138105
AFFX-BioB-M_st 11.2762 A 0.216524
AFFX-BioB-3_st 3.48184 A 0.712257
AFFX-BioC-5_st 1.20738 A 0.883887
AFFX-BioC-3_st 0.20796 A 0.9273
AFFX-BioDn-5_st 4.38583 A 0.368438
AFFX-BioDn-3_st 34.4341 A 0.083592

Total number of rows: 8799

Table truncated, full table size 285 Kbytes.




Supplementary data files not provided

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