|
| Status |
Public on May 24, 2023 |
| Title |
UC 6 |
| Sample type |
SRA |
| |
|
| Source name |
mucosal biopsy
|
| Organism |
Homo sapiens |
| Characteristics |
remission status: not applicable
remission duration: 0
tissue: mucosal biopsy
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated using the Allprep DNA/ RNA Mini Kit from Qiagen(catalogue number 80204)
Whole transcriptome libraries of UC remission samples were prepared with the TruSeq Stranded Total RNA LT Sample Prep Kit from Illumina (catalogue number RS-122–2203).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
DESeq2 log normalization+1
|
| |
|
| Submission date |
Jun 29, 2022 |
| Last update date |
May 24, 2023 |
| Contact name |
Wei Meng |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Tromsø
|
| Department |
Faculty of Health Sciences
|
| Lab |
GSCT
|
| Street address |
MH bygget
|
| City |
Tromsø |
| ZIP/Postal code |
9037 |
| Country |
Norway |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
| GSE169360 |
Anti-apoptotic genes and non-coding RNAs are potential outcome predictors for ulcerative colitis |
|
