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Sample GSM62857 Query DataSets for GSM62857
Status Public on Aug 23, 2005
Title vehicle control 15 days biological replicate 2
Sample type RNA
 
Source name animal 68
Organism Macaca fascicularis
Characteristics male liver
Extracted molecule total RNA
Extraction protocol Approximately 3 grams from the right lateral liver lobe was flash-frozen in liquid nitrogen. Total RNA isolated using TRIzol.
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver from animal 68, treated with vehicle only for 15 days
Data processing Affymetrix Microarray Suite version 5.0 given here for convenience. Note that data processing reported in the Toxicological Sciences manuscript was done using Rosetta Resolver and the Rosetta Resolver treated versus control group fold-change and p-value are appended to Series entry.
 
Submission date Jun 30, 2005
Last update date Mar 16, 2009
Contact name Neal F Cariello
E-mail(s) [email protected]
Phone 919 971 5307
Organization name GlaxoSmithKline
Department Safety Assessment
Lab Investigative Toxicology and Pathology
Street address 5 Moore Drive, Bldg 9, Rom 2011
City Research Triangle Park
State/province NC
ZIP/Postal code 27713
Country USA
 
Platform ID GPL8300
Series (1)
GSE2853 Ciprofibrate (PPAR-alpha agonist) in the monkey liver

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
34639_at 8.2 A 0.964837
40662_g_at 59.3 P 0.035163
1359_at 18.8 A 0.715253
38244_at 3.1 A 0.933135
38929_at 11.7 A 0.621816
32522_f_at 31.8 A 0.715253
34242_at 22.4 A 0.765443
38784_g_at 93.4 A 0.418069
40603_at 70.1 A 0.284747
35356_at 100.2 A 0.35869
33511_at 46.9 A 0.189687
39703_at 36.7 P 0.011447
36850_at 5.2 A 0.910595
35359_at 621.8 P 0.009985
36119_at 64.1 A 0.150487
387_at 198.6 A 0.066865
31514_at 195 A 0.267463
794_at 32.2 A 0.5
34984_at 4.2 A 0.939581
708_at 16.9 A 0.849473

Total number of rows: 12625

Table truncated, full table size 309 Kbytes.




Supplementary file Size Download File type/resource
GSM62857.CEL.gz 2.8 Mb (ftp)(http) CEL

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