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Sample GSM641929 Query DataSets for GSM641929
Status Public on Jun 30, 2011
Title CFU-E +EPO 0.5U at 8h
Sample type RNA
 
Source name CFU-E +EPO 0.5U at 8h
Organism Mus musculus
Characteristics strain: BALB/c
developmental stage: E13.5 embryos
tissue: liver
Treatment protocol Fetal livers were resuspended in PBS/ 0.3% BSA and passed through a 40 µm cell strainer (BD Biosciences). Fetal liver cells (FLC´s) were treated with 10 ml Red Blood Cell Lysis Buffer (Sigma-Aldrich) to remove erythrocytes. For sorting TER119− erythroid progenitors, FLC´s were incubated with rat antibodies against the following surface markers: GR1, CD41, CD11b, CD14, CD45R/B220, CD4, CD8 (BD Pharmingen), Ter119 (gift from Albrecht Müller, Julius-Maximilians-University, Würzburg, Germany) and with YBM/42 (gift from Suzanne M. Watt, University of Oxford, Oxford, UK) for 20 min at 4°C. After washing cells were incubated for 20 min at 4°C with anti-rat antibody-coupled magnetic beads and negatively sorted with MACS columns according to the manufacturer's instructions (Miltenyi Biotech). Sorted CFU-E were cultivated for 12-14 h in IMDM (Invitrogen), 30% fetal calf serum (FCS), and 50 µM µ-mercaptoethanol supplemented with 0.5 U/ml Epo (Cilag-Jansen).
Growth protocol E13.5 Balb/c mouse embryos were dissected from the uterus of sacrificed females
Extracted molecule total RNA
Extraction protocol RNeasy Mini Plus Kit (Qiagen, Hilden, Germany)
Label Biotin
Label protocol Biotinylated cRNA was generated from 1.5 µg total RNA using the One-Cycle Target Labeling Assay (Affymetrix).
 
Hybridization protocol 15 µg labelled cRNA were hybridized onto the Mouse Genome 2.0 GeneChip® Arrays (Affymetrix, CA, USA) for 16h at 45°C using Hybridization Wash and Stain Kit (Affymetrix)
Scan protocol Arrays were washed and stained with GeneChip Fluidics Station 450 and scanned with GeneChip Scanner 3000 using the GeneChip Operating Software (Affymetrix).
Data processing R/Bioconductor
 
Submission date Dec 17, 2010
Last update date Jul 01, 2011
Contact name Hauke Busch
E-mail(s) [email protected]
Phone +49-451-3101-8470
Organization name University of Lübeck
Department Lübeck Institute of Experimental Dermatology
Street address Ratzeburger Allee 160
City Lübeck
State/province Schleswig-Holstein
ZIP/Postal code 23538
Country Germany
 
Platform ID GPL1261
Series (1)
GSE26151 Splitting Function enables Dual Feedback Regulation to Control JAK2/STAT5 Signaling for a Wide Ligand Range

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
1415670_at 8.449154419
1415671_at 9.479067064
1415672_at 10.47780272
1415673_at 10.6934336
1415674_a_at 10.26136857
1415675_at 8.969981804
1415676_a_at 11.62886183
1415677_at 7.027429084
1415678_at 9.91822595
1415679_at 10.87750487
1415680_at 8.833226316
1415681_at 9.979713336
1415682_at 6.476654964
1415683_at 10.34687912
1415684_at 7.724061027
1415685_at 8.591805441
1415686_at 7.245636493
1415687_a_at 8.337035029
1415688_at 9.828750914
1415689_s_at 7.10855724

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM641929.CEL.gz 5.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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