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Sample GSM6427971 Query DataSets for GSM6427971
Status Public on Aug 05, 2022
Title Sample43.eRapa.205844020021_R01C02
Sample type genomic
 
Source name Liver
Organism Mus musculus
Characteristics age: 0.166666667
Sex: Female
tissue: Liver
agemonths: 2
treatment: eRapa
platenumber: Plate 01
welladdress: C06
dna.concentration: 17.84
dna.volume: 30
Treatment protocol Standard Illumina Protocol
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from tissue=Liver species=Mouse
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Aug 02, 2022
Last update date Aug 05, 2022
Contact name Steve Horvath
E-mail(s) [email protected]
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL32543
Series (1)
GSE210308 Methylation study of rapamycin treatment during development in mice

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165_TC21 0.5067154722932471
cg00001209_TC21 0.7906481291673656
cg00001364_TC21 0.9263199708779037
cg00001582_TC21 0.037324746106366304
cg00002920_TC21 0.6685714129033439
cg00003994_TC21 0.032839810731628685
cg00004555_BC21 0.10679286026632209
cg00005112_TC21 0.8883253212966633
cg00005271_TC21 0.9586009401042048
cg00006213_TC21 0.8996991952620469
cg00008998_TC21 0.4757550464451262
cg00009248_TC21 0.8229737900155589
cg00009319_BC21 0.4029153011883973
cg00010445_TC21 0.7154645730651044
cg00010903_BC21 0.4872274846248057
cg00010926_BC21 0.9122354070742418
cg00010977_TC21 0.858825990702366
cg00012521_TO21 0.48806261853586086
cg00012879_TC21 0.4802154706607927
cg00013189_BC11 0.021065313252166443

Total number of rows: 326732

Table truncated, full table size 11243 Kbytes.




Supplementary file Size Download File type/resource
GSM6427971_205844020021_R01C02_Grn.idat.gz 2.8 Mb (ftp)(http) IDAT
GSM6427971_205844020021_R01C02_Red.idat.gz 2.9 Mb (ftp)(http) IDAT
Processed data included within Sample table

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