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Sample GSM646 Query DataSets for GSM646
Status Public on Dec 17, 2001
Title Large Pre-BII cells 9b
Sample type RNA
 
Source name Large Pre-BII cells
Organism Mus musculus
Extracted molecule total RNA
 
Description B220+CD25+sIg- Large Pre BII cells sorted out of mouse bone marrow, sort no. 9
 
Submission date Nov 27, 2001
Last update date Mar 20, 2006
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (2)
GSE13 Murine bone marrow B cell precursors
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF Affymetrix probe set identifier
Experiment Name Experiment name
POSITIVE Number of positive probe pairs
NEGATIVE Number of negative probe pairs
PAIRS Number of probe set specific probe pairs on the array
PAIRS_USED Pairs used
PAIRS_IN_AVG Trimmed probe pair set
POS_FRACTION Positive/pairs used
Log Avg Log average
PM Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
POS/NEG Positive/negative
VALUE Average difference intensity
ABS_CALL Whether a probe set is present, marginal, or absent; see Affymetrix Literature

Data table
ID_REF Experiment Name POSITIVE NEGATIVE PAIRS PAIRS_USED PAIRS_IN_AVG POS_FRACTION Log Avg PM Excess MM Excess POS/NEG VALUE ABS_CALL
IL2_at RHMu9LarB 3 2 19 19 17 0.16 1.35 0 0 1.5 -5 A
IL10_at RHMu9LarB 6 3 20 20 19 0.30 1.18 0 0 2.0 198 A
GMCSF_at RHMu9LarB 5 4 20 20 17 0.25 0.46 0 0 1.3 130 A
TNFRII_at RHMu9LarB 4 3 20 20 19 0.20 0.29 0 0 1.3 69 A
MIP1-B_at RHMu9LarB 4 4 20 20 18 0.20 0.28 0 0 1.0 464 A
IL4_at RHMu9LarB 5 2 20 20 18 0.25 1.20 2 0 2.5 64 A
IL12_P40_at RHMu9LarB 2 5 20 20 19 0.10 0.55 0 0 0.4 -120 A
TNFa_at RHMu9LarB 1 2 20 20 18 0.05 1.17 0 0 0.5 75 A
TCRa_at RHMu9LarB 3 4 20 20 19 0.15 -0.41 0 0 0.8 -210 A
AFFX-BioB-5_at RHMu9LarB 1 2 20 20 19 0.05 0.08 0 0 0.5 39 A
AFFX-BioB-M_at RHMu9LarB 0 2 20 20 19 0.00 0.02 0 0 0.0 -71 A
AFFX-BioB-3_at RHMu9LarB 3 4 20 20 19 0.15 -0.07 0 0 0.8 10 A
AFFX-BioC-5_at RHMu9LarB 7 1 20 20 19 0.35 1.65 0 0 7.0 637 P
AFFX-BioC-3_at RHMu9LarB 4 2 20 20 19 0.20 0.86 0 0 2.0 339 A
AFFX-BioDn-5_at RHMu9LarB 11 1 20 20 19 0.55 1.62 0 0 11.0 420 P
AFFX-BioDn-3_at RHMu9LarB 15 0 20 20 19 0.75 3.17 0 0 Undef 3236 P
AFFX-CreX-5_at RHMu9LarB 19 0 20 20 19 0.95 6.29 0 0 Undef 5532 P
AFFX-CreX-3_at RHMu9LarB 19 0 20 20 20 0.95 6.37 2 0 Undef 11610 P
AFFX-BioB-5_st RHMu9LarB 5 4 20 20 20 0.25 0.57 0 0 1.3 157 A
AFFX-BioB-M_st RHMu9LarB 4 3 20 20 17 0.20 0.22 0 0 1.3 68 A

Total number of rows: 6595

Table truncated, full table size 403 Kbytes.




Supplementary data files not provided
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