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Sample GSM64856 Query DataSets for GSM64856
Status Public on Apr 11, 2006
Title Treatment: DHT; time: 6 hrs; repeat: 2
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
Treated with DHT for 6 hrs
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 19, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL96
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1711_H133A_T6.2_Stat Pairs Probe pairs available (PM/MM)
0068_1711_H133A_T6.2_Stat Pairs Used Prove pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1711_H133A_T6.2_Stat Pairs 0068_1711_H133A_T6.2_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 332.7 P 0.002556
AFFX-BioB-M_at 20 20 644.1 P 0.00011
AFFX-BioB-3_at 20 20 356.3 P 0.000195
AFFX-BioC-5_at 20 20 958.1 P 0.000195
AFFX-BioC-3_at 20 20 782.6 P 0.000147
AFFX-BioDn-5_at 20 20 1084.3 P 0.00006
AFFX-BioDn-3_at 20 20 5070.9 P 0.000127
AFFX-CreX-5_at 20 20 9218.5 P 0.000044
AFFX-CreX-3_at 20 20 12071 P 0.000044
AFFX-DapX-5_at 20 20 6.4 A 0.440646
AFFX-DapX-M_at 20 20 23.9 A 0.39692
AFFX-DapX-3_at 20 20 5.8 A 0.699394
AFFX-LysX-5_at 20 20 13.8 A 0.382599
AFFX-LysX-M_at 20 20 40.6 A 0.603081
AFFX-LysX-3_at 20 20 3.4 A 0.783476
AFFX-PheX-5_at 20 20 3.1 A 0.910522
AFFX-PheX-M_at 20 20 10.9 A 0.737173
AFFX-PheX-3_at 20 20 13.7 A 0.824672
AFFX-ThrX-5_at 20 20 4.8 A 0.910522
AFFX-ThrX-M_at 20 20 11.3 A 0.51489

Total number of rows: 22283

Table truncated, full table size 724 Kbytes.




Supplementary file Size Download File type/resource
GSM64856.CEL.gz 3.4 Mb (ftp)(http) CEL

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