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Sample GSM64858 Query DataSets for GSM64858
Status Public on Apr 11, 2006
Title Treatment: vehicle; time: 24 hrs; repeat: 2
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
Treated with ethanol vehicle for 24 hrs.
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 19, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL96
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1713_H133A_V24.2_Stat Pairs Probe pairs available (PM/MM)
0068_1713_H133A_V24.2_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1713_H133A_V24.2_Stat Pairs 0068_1713_H133A_V24.2_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 239.8 P 0.00762
AFFX-BioB-M_at 20 20 421.1 P 0.000095
AFFX-BioB-3_at 20 20 285 P 0.000195
AFFX-BioC-5_at 20 20 749.8 P 0.000127
AFFX-BioC-3_at 20 20 546.5 P 0.000127
AFFX-BioDn-5_at 20 20 956.6 P 0.00006
AFFX-BioDn-3_at 20 20 4846.6 P 0.000258
AFFX-CreX-5_at 20 20 8038.4 P 0.000044
AFFX-CreX-3_at 20 20 10529.7 P 0.000044
AFFX-DapX-5_at 20 20 22 A 0.185131
AFFX-DapX-M_at 20 20 55.2 M 0.058444
AFFX-DapX-3_at 20 20 4.4 A 0.860518
AFFX-LysX-5_at 20 20 12.9 A 0.32708
AFFX-LysX-M_at 20 20 10 A 0.699394
AFFX-LysX-3_at 20 20 5.4 A 0.559354
AFFX-PheX-5_at 20 20 6.1 A 0.783476
AFFX-PheX-M_at 20 20 6.2 A 0.804734
AFFX-PheX-3_at 20 20 14.5 A 0.804734
AFFX-ThrX-5_at 20 20 7.9 A 0.724854
AFFX-ThrX-M_at 20 20 25.6 A 0.455413

Total number of rows: 22283

Table truncated, full table size 724 Kbytes.




Supplementary file Size Download File type/resource
GSM64858.CEL.gz 3.5 Mb (ftp)(http) CEL

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