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Sample GSM64865 Query DataSets for GSM64865
Status Public on Apr 11, 2006
Title Treatment: DHT; time: 24 hrs; repeat: 3
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
Treated with DHT for 24 hrs
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 19, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL96
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1715_H133A_T24.3_Stat Pairs Probe pairs available (PM/MM)
0068_1715_H133A_T24.3_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1715_H133A_T24.3_Stat Pairs 0068_1715_H133A_T24.3_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 343.4 P 0.001102
AFFX-BioB-M_at 20 20 914.5 P 0.000052
AFFX-BioB-3_at 20 20 570 P 0.00011
AFFX-BioC-5_at 20 20 1060.6 P 0.00007
AFFX-BioC-3_at 20 20 816.4 P 0.00006
AFFX-BioDn-5_at 20 20 1228.2 P 0.000052
AFFX-BioDn-3_at 20 20 5907.5 P 0.00006
AFFX-CreX-5_at 20 20 10198.2 P 0.000044
AFFX-CreX-3_at 20 20 14360.9 P 0.000044
AFFX-DapX-5_at 20 20 18.1 A 0.123572
AFFX-DapX-M_at 20 20 7.6 A 0.5
AFFX-DapX-3_at 20 20 5.4 A 0.712257
AFFX-LysX-5_at 20 20 9.2 A 0.631562
AFFX-LysX-M_at 20 20 10 A 0.672921
AFFX-LysX-3_at 20 20 3.2 A 0.686277
AFFX-PheX-5_at 20 20 2 A 0.957038
AFFX-PheX-M_at 20 20 3.4 A 0.876428
AFFX-PheX-3_at 20 20 19.1 A 0.559354
AFFX-ThrX-5_at 20 20 22.9 A 0.51489
AFFX-ThrX-M_at 20 20 30 A 0.227636

Total number of rows: 22283

Table truncated, full table size 722 Kbytes.




Supplementary file Size Download File type/resource
GSM64865.CEL.gz 3.4 Mb (ftp)(http) CEL

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