|
| Status |
Public on Jan 09, 2012 |
| Title |
Liver biopsy sample :REJ member: BX.P26 |
| Sample type |
RNA |
| |
|
| Source name |
Liver biopsy sample
|
| Organism |
Homo sapiens |
| Characteristics |
liver sample group: REJ
demographic origin center: Hospital Clinic
|
| Growth protocol |
liver sample with typical acute cellular rejection taking place during the immediate post-transplant period
|
| Extracted molecule |
total RNA |
| Extraction protocol |
For total RNA extraction cryopreserved liver tissue samples were homogenized in TRIzol reagent (Invitrogen, San Diego, CA, USA) using pestle and nuclease-free 1,5ml reaction tubes (Ambion). Total RNA was then extracted following the manufacturers guidelines and quality was assessed with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, USA).
|
| Label |
biotin
|
| Label protocol |
Biotinylated cDNA were prepared with the Illumina® TotalPrep™ RNA Amplification Kit (Ambion)
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
liver sample with typical acute cellular rejection taking place during the immediate post-transplant period BX.P26
|
| Data processing |
The data were normalised using quantile normalisation with Bioconductor (v2.5) Lumi package.
|
| |
|
| Submission date |
Jan 13, 2011 |
| Last update date |
Jan 09, 2012 |
| Contact name |
Juanjo Lozano |
| E-mail(s) |
[email protected]
|
| Organization name |
CIBEREHD
|
| Department |
Plataforma de Bioinformatica
|
| Street address |
C/ Rosselló 153
|
| City |
Barcelona |
| ZIP/Postal code |
08036 |
| Country |
Spain |
| |
|
| Platform ID |
GPL6947 |
| Series (2) |
| GSE26625 |
MOLECULAR CHARACTERIZATION OF LIVER ALLOGRAFTS FROM OPERATIONALLY TOLERANT TRANSPLANT RECIPIENTS (Illumina) |
| GSE26627 |
MOLECULAR CHARACTERIZATION OF LIVER ALLOGRAFTS FROM OPERATIONALLY TOLERANT TRANSPLANT RECIPIENTS |
|
