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Sample GSM66942 Query DataSets for GSM66942
Status Public on Nov 08, 2005
Title 12_50US_50Placenta_HG_U133_Plus_2
Sample type RNA
 
Source name PBMC and Placenta
Organism Homo sapiens
Characteristics Approximately 50 mL whole blood was collected from 30 adult, apparently healthy, volunteers using Acid Citrate Dextrose (ACD) as an anti-coagulant. Samples were processed immediately following blood draw. Cells were isolated by Ficoll gradient centrifugation and total RNA was isolated using Trizol (Invitrogen Life Technologies; Carlsbad, CA) according to manufacturer’s protocol, aliquoted and stored at -80°C until use. Whole placenta was collected and immediately frozen in liquid nitrogen. RNA was extracted using TRI reagent, purified using RNeasy columns (Qiagen; Valencia, CA), aliquoted and stored at -80°C until use. RNA mixtures (100:0, 95:5, 75:25, 50:50, 25:75, 0:100; PBMC: placenta) were prepared in single aliquots.
Extracted molecule total RNA
Label Affymetrix standard protocol
 
Description Technical labeling replicate of 4_50US_50Placenta_HG_U133_Plus_2 (GSM66941)
Data processing RMA via Bioconductor
 
Submission date Aug 02, 2005
Last update date Aug 28, 2018
Contact name Michael Barnes
E-mail(s) [email protected]
Phone 513-636-1319
Organization name Cincinnati Childrens Hospital Medical Center
Department Rheumatology
Lab Dr. David Glass
Street address 3333 Burnet Ave
City Cincinnati
State/province OH
ZIP/Postal code 45229
Country USA
 
Platform ID GPL570
Series (1)
GSE3077 Dillution series comparison of Affymetrix and Illumina Expression Platforms
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA expression values

Data table
ID_REF VALUE
1007_s_at 9.483509666
1053_at 6.739390509
117_at 8.03386383
121_at 7.121701093
1255_g_at 2.675361048
1294_at 7.310611536
1316_at 4.970543541
1320_at 6.357547112
1405_i_at 10.73373646
1431_at 3.338501571
1438_at 5.305623839
1487_at 7.121231959
1494_f_at 5.080951261
1552256_a_at 9.677549257
1552257_a_at 6.547214839
1552258_at 4.846256689
1552261_at 5.045568045
1552263_at 5.722108667
1552264_a_at 8.385941117
1552266_at 3.588734626

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM66942.CEL.gz 7.8 Mb (ftp)(http) CEL

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