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GEO accession:
Sample GSM67055
Query DataSets for GSM67055
Status
Public on Aug 04, 2005
Title
FL478 salt stressed replicate 1
Sample type
RNA
Source name
crown and growing point
Organism
Oryza sativa Indica Group
Characteristics
salt-tolerant salt stressed
Extracted molecule
total RNA
Extraction protocol
Approximately 12 plants were dissected to obtain the crown and growing point tissue
Label
biotin
Label protocol
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
FL478 salt stressed
Data processing
GCOS 1.2
Submission date
Aug 03, 2005
Last update date
Aug 03, 2005
Contact name
HARKAMAL WALIA
E-mail(s)
[email protected]
Phone
951-827-3808
Organization name
University of California
Street address
Department of Botany & Plant Sciecnes
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL2025
Series (1)
GSE3053
Rice salt expression
Data table header descriptions
ID_REF
VALUE
GCOS12-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
497.6
P
0.000297
AFFX-BioB-M_at
333.5
P
0.00006
AFFX-BioB-3_at
254.7
P
0.000147
AFFX-BioC-5_at
601.4
P
0.000081
AFFX-BioC-3_at
681.2
P
0.000052
AFFX-BioDn-5_at
1852.8
P
0.000044
AFFX-BioDn-3_at
5230
P
0.000052
AFFX-CreX-5_at
9897.3
P
0.000044
AFFX-CreX-3_at
13797.8
P
0.000044
AFFX-DapX-5_at
1963
P
0.000044
AFFX-DapX-M_at
3664
P
0.000052
AFFX-DapX-3_at
6504.5
P
0.000044
AFFX-LysX-5_at
351.3
P
0.00007
AFFX-LysX-M_at
494.4
P
0.003595
AFFX-LysX-3_at
1290.4
P
0.00007
AFFX-PheX-5_at
550.4
P
0.000044
AFFX-PheX-M_at
599
P
0.000044
AFFX-PheX-3_at
713.7
P
0.000052
AFFX-ThrX-5_at
488.2
P
0.000044
AFFX-ThrX-M_at
886.7
P
0.000044
Total number of rows:
57381
Table truncated, full table size
1959 Kbytes
.
Supplementary data files not provided
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